Information for 7-RRGCRAKMAGYCGCGG (Motif 9)

C T A G C T A G A C T G A T G C C T G A C T G A C A T G G T C A C G T A A C T G A G T C A G T C A C T G A G T C A C T G A C T G
Reverse Opposite:
A G T C A G T C T A C G A G T C A C T G C T A G A G T C A C G T A C G T G T A C A G C T A G C T A T C G A G T C A G T C A G T C
p-value:1e-11
log p-value:-2.719e+01
Information Content per bp:1.843
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.4 +/- 13.4bp
Average Position of motif in Background47.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:RRGCRAKMAGYCGCGG
-----CGCAGCTGCG-
 C T A G C T A G A C T G A T G C C T G A C T G A C A T G G T C A C G T A A C T G A G T C A G T C A C T G A G T C A C T G A C T G
A C G T A C G T A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:2
Score:0.50
Offset:2
Orientation:forward strand
Alignment:RRGCRAKMAGYCGCGG-
--AGCAACAGCCGCACC
 C T A G C T A G A C T G A T G C C T G A C T G A C A T G G T C A C G T A A C T G A G T C A G T C A C T G A G T C A C T G A C T G A C G T
A C G T A C G T T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:3
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:RRGCRAKMAGYCGCGG-
--NNAATTAGTCACGGT
 C T A G C T A G A C T G A T G C C T G A C T G A C A T G G T C A C G T A A C T G A G T C A G T C A C T G A G T C A C T G A C T G A C G T
A C G T A C G T A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

PB0008.1_E2F2_1/Jaspar

Match Rank:4
Score:0.48
Offset:4
Orientation:forward strand
Alignment:RRGCRAKMAGYCGCGG---
----ATAAAGGCGCGCGAT
 C T A G C T A G A C T G A T G C C T G A C T G A C A T G G T C A C G T A A C T G A G T C A G T C A C T G A G T C A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T

PB0202.1_Zfp410_2/Jaspar

Match Rank:5
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:RRGCRAKMAGYCGCGG-----
----NNTNNGGGGCGGNGNGN
 C T A G C T A G A C T G A T G C C T G A C T G A C A T G G T C A C G T A A C T G A G T C A G T C A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C T G A C A G T C G A T G C A T T A C G A C T G T A C G A C T G T G A C T C A G C T A G C T A G C T A G C A G T C T A G T C G A

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.47
Offset:4
Orientation:forward strand
Alignment:RRGCRAKMAGYCGCGG---
----ATAAGGGCGCGCGAT
 C T A G C T A G A C T G A T G C C T G A C T G A C A T G G T C A C G T A A C T G A G T C A G T C A C T G A G T C A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.47
Offset:9
Orientation:reverse strand
Alignment:RRGCRAKMAGYCGCGG-
---------GGCGCGCT
 C T A G C T A G A C T G A T G C C T G A C T G A C A T G G T C A C G T A A C T G A G T C A G T C A C T G A G T C A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.47
Offset:9
Orientation:forward strand
Alignment:RRGCRAKMAGYCGCGG-------
---------GCCGCGCAGTGCGT
 C T A G C T A G A C T G A T G C C T G A C T G A C A T G G T C A C G T A A C T G A G T C A G T C A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

NFYB/MA0502.1/Jaspar

Match Rank:9
Score:0.46
Offset:-5
Orientation:forward strand
Alignment:-----RRGCRAKMAGYCGCGG
AAATGGACCAATCAG------
 A C G T A C G T A C G T A C G T A C G T C T A G C T A G A C T G A T G C C T G A C T G A C A T G G T C A C G T A A C T G A G T C A G T C A C T G A G T C A C T G A C T G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.46
Offset:5
Orientation:reverse strand
Alignment:RRGCRAKMAGYCGCGG------
-----NAGANTGGCGGGGNGNA
 C T A G C T A G A C T G A T G C C T G A C T G A C A T G G T C A C G T A A C T G A G T C A G T C A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A