Information for 9-GAGAGAGAGA (Motif 48)

T A C G C T G A T C A G C G T A T C A G C T G A T A C G C T G A T C A G T C G A
Reverse Opposite:
A G C T A G T C G A C T A T G C G A C T A G T C G C A T A G T C G A C T A T G C
p-value:1e-5
log p-value:-1.208e+01
Information Content per bp:1.649
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif11.08%
Number of Background Sequences with motif3176.7
Percentage of Background Sequences with motif6.73%
Average Position of motif in Targets52.7 +/- 26.2bp
Average Position of motif in Background50.0 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GAGAGAGAGA
NNNACCGAGAGTNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T T A C G C T G A T C A G C G T A T C A G C T G A T A C G C T G A T C A G T C G A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGAGA
GAAAGTGAAAGT
 A C G T A C G T T A C G C T G A T C A G C G T A T C A G C T G A T A C G C T G A T C A G T C G A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGAGA-
AGGTGNCAGACAG
 A C G T A C G T T A C G C T G A T C A G C G T A T C A G C T G A T A C G C T G A T C A G T C G A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PRDM1/MA0508.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAGAGA----
AGAAAGTGAAAGTGA
 A C G T T A C G C T G A T C A G C G T A T C A G C T G A T A C G C T G A T C A G T C G A A C G T A C G T A C G T A C G T
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

PB0139.1_Irf5_2/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGAGAGAGA---
TTGACCGAGAATTCC
 A C G T A C G T T A C G C T G A T C A G C G T A T C A G C T G A T A C G C T G A T C A G T C G A A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

E2F6/MA0471.1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGA-
GGGCGGGAAGG
 T A C G C T G A T C A G C G T A T C A G C T G A T A C G C T G A T C A G T C G A A C G T
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGA--
GAAAGTGAAAGT
 T A C G C T G A T C A G C G T A T C A G C T G A T A C G C T G A T C A G T C G A A C G T A C G T
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGA--
AGGTGHCAGACA
 T A C G C T G A T C A G C G T A T C A G C T G A T A C G C T G A T C A G T C G A A C G T A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGAGAGA-
TGAGTGACAGSC
 A C G T T A C G C T G A T C A G C G T A T C A G C T G A T A C G C T G A T C A G T C G A A C G T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

IRF2/MA0051.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAGAGA-------
GGAAAGCGAAACCAAAAC
 A C G T T A C G C T G A T C A G C G T A T C A G C T G A T A C G C T G A T C A G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G C T A G C G T A C G T A C G T A C T A G A G C T A C T G C G T A C G T A C G T A A T C G A G T C C T G A C G T A C G T A G C T A G T A C