Information for 2-CATGCTSTGCAGCTGC (Motif 4)

A G T C G C T A C G A T A C T G A T G C A C G T A T G C C A G T A C T G G T A C C T G A A C T G A G T C A G C T T A C G G T A C
Reverse Opposite:
C A T G A T G C C T G A A C T G G T A C A G C T C A T G A G T C G C T A A T C G C G T A A T C G G T A C C G T A C G A T A C T G
p-value:1e-13
log p-value:-3.133e+01
Information Content per bp:1.742
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.7 +/- 22.7bp
Average Position of motif in Background65.0 +/- 12.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CATGCTSTGCAGCTGC
TNTCCTGCTGTGNNG----
 A C G T A C G T A C G T A G T C G C T A C G A T A C T G A T G C A C G T A T G C C A G T A C T G G T A C C T G A A C T G A G T C A G C T T A C G G T A C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CATGCTSTGCAGCTGC
NNTCCTGCTGTGNNN----
 A C G T A C G T A C G T A G T C G C T A C G A T A C T G A T G C A C G T A T G C C A G T A C T G G T A C C T G A A C T G A G T C A G C T T A C G G T A C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CATGCTSTGCAGCTGC
TCNCCTGCTGNGNNN----
 A C G T A C G T A C G T A G T C G C T A C G A T A C T G A T G C A C G T A T G C C A G T A C T G G T A C C T G A A C T G A G T C A G C T T A C G G T A C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CATGCTSTGCAGCTGC
CCTGCTGAGH------
 A G T C G C T A C G A T A C T G A T G C A C G T A T G C C A G T A C T G G T A C C T G A A C T G A G T C A G C T T A C G G T A C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:5
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CATGCTSTGCAGCTGC-----
----CTCAGCAGCTGCTACTG
 A G T C G C T A C G A T A C T G A T G C A C G T A T G C C A G T A C T G G T A C C T G A A C T G A G T C A G C T T A C G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CATGCTSTGCAGCTGC
CCCCCTGCTGTG-------
 A C G T A C G T A C G T A G T C G C T A C G A T A C T G A T G C A C G T A T G C C A G T A C T G G T A C C T G A A C T G A G T C A G C T T A C G G T A C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:7
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:CATGCTSTGCAGCTGC-
-------CGCAGCTGCG
 A G T C G C T A C G A T A C T G A T G C A C G T A T G C C A G T A C T G G T A C C T G A A C T G A G T C A G C T T A C G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

Ascl2/MA0816.1/Jaspar

Match Rank:8
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:CATGCTSTGCAGCTGC-
-------AGCAGCTGCT
 A G T C G C T A C G A T A C T G A T G C A C G T A T G C C A G T A C T G G T A C C T G A A C T G A G T C A G C T T A C G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

Myog/MA0500.1/Jaspar

Match Rank:9
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CATGCTSTGCAGCTGC-
------NNGCAGCTGTC
 A G T C G C T A C G A T A C T G A T G C A C G T A T G C C A G T A C T G G T A C C T G A A C T G A G T C A G C T T A C G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CATGCTSTGCAGCTGC
GGCCYCCTGCTGDGH------
 A C G T A C G T A C G T A C G T A C G T A G T C G C T A C G A T A C T G A T G C A C G T A T G C C A G T A C T G G T A C C T G A A C T G A G T C A G C T T A C G G T A C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T