Information for 17-GGCAWSGCMACTT (Motif 37)

A T C G A T C G A T G C C G T A G C T A A T G C T A C G G A T C G T C A C G T A A T G C C A G T A C G T
Reverse Opposite:
G T C A G T C A A T C G A C G T A C G T C T A G A T G C T A C G C G A T C G A T A T C G A T G C A T G C
p-value:1e-8
log p-value:-1.895e+01
Information Content per bp:1.680
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets60.0 +/- 18.6bp
Average Position of motif in Background38.0 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGCAWSGCMACTT
TTGCCATGGCAACN-
 A C G T A C G T A T C G A T C G A T G C C G T A G C T A A T G C T A C G G A T C G T C A C G T A A T G C C A G T A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGCAWSGCMACTT
--CAAGGHCANV-
 A T C G A T C G A T G C C G T A G C T A A T G C T A C G G A T C G T C A C G T A A T G C C A G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGCAWSGCMACTT
-SCCTAGCAACAG
 A T C G A T C G A T G C C G T A G C T A A T G C T A C G G A T C G T C A C G T A A T G C C A G T A C G T
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGCAWSGCMACTT
GTTGCCATGGCAAC--
 A C G T A C G T A C G T A T C G A T C G A T G C C G T A G C T A A T G C T A C G G A T C G T C A C G T A A T G C C A G T A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GGCAWSGCMACTT
TTGCCATGGCAACC-
 A C G T A C G T A T C G A T C G A T G C C G T A G C T A A T G C T A C G G A T C G T C A C G T A A T G C C A G T A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GGCAWSGCMACTT
KGTTGCCATGGCAAC--
 A C G T A C G T A C G T A C G T A T C G A T C G A T G C C G T A G C T A A T G C T A C G G A T C G T C A C G T A A T G C C A G T A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C A C G T A C G T

PB0033.1_Irf3_1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGCAWSGCMACTT
GAGAACCGAAACTG
 A C G T A T C G A T C G A T G C C G T A G C T A A T G C T A C G G A T C G T C A C G T A A T G C C A G T A C G T
A C T G C T G A C T A G C G T A G C T A G T A C T A G C C T A G T C G A G C T A G C T A A T G C G A C T C T A G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GGCAWSGCMACTT
CGGTTGCCATGGCAAC--
 A C G T A C G T A C G T A C G T A C G T A T C G A T C G A T G C C G T A G C T A A T G C T A C G G A T C G T C A C G T A A T G C C A G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C A C G T A C G T

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGCAWSGCMACTT
GGAAGTGAAAST-
 A T C G A T C G A T G C C G T A G C T A A T G C T A C G G A T C G T C A C G T A A T G C C A G T A C G T
C T A G C T A G C G T A C G T A T A C G C G A T C T A G C T G A C T G A C G T A T A C G G A C T A C G T

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGCAWSGCMACTT-
GGAAANTGAAACTNA
 A C G T A T C G A T C G A T G C C G T A G C T A A T G C T A C G G A T C G T C A C G T A A T G C C A G T A C G T A C G T
T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A