Information for 21-CATGTGCCAGYCACCT (Motif 35)

A T G C G T C A G A C T A C T G A C G T A C T G T G A C A T G C C G T A A C T G G A C T G A T C G T C A A T G C G T A C A C G T
Reverse Opposite:
C G T A A C T G A T C G A C G T C A T G C T G A A G T C C G A T A T C G A C T G G T A C G T C A G T A C C T G A C A G T A T C G
p-value:1e-8
log p-value:-1.962e+01
Information Content per bp:1.701
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif13.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets42.6 +/- 19.3bp
Average Position of motif in Background44.7 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CATGTGCCAGYCACCT
-AGGTGHCAGACA---
 A T G C G T C A G A C T A C T G A C G T A C T G T G A C A T G C C G T A A C T G G A C T G A T C G T C A A T G C G T A C A C G T
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CATGTGCCAGYCACCT
-AGGTGNCAGACAG--
 A T G C G T C A G A C T A C T G A C G T A C T G T G A C A T G C C G T A A C T G G A C T G A T C G T C A A T G C G T A C A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CATGTGCCAGYCACCT---
VCAKCTGGNNNCCAGMTGBN
 A C G T A T G C G T C A G A C T A C T G A C G T A C T G T G A C A T G C C G T A A C T G G A C T G A T C G T C A A T G C G T A C A C G T A C G T A C G T A C G T
T G A C G T A C C G T A A C T G T G A C C G A T A C T G A T C G A G C T T A C G T C G A T A G C G T A C C G T A A T C G T G A C G C A T A C T G A C T G A T G C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CATGTGCCAGYCACCT
-CTGTTCCTGG-----
 A T G C G T C A G A C T A C T G A C G T A C T G T G A C A T G C C G T A A C T G G A C T G A T C G T C A A T G C G T A C A C G T
A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:CATGTGCCAGYCACCT
--------TGACACCT
 A T G C G T C A G A C T A C T G A C G T A C T G T G A C A T G C C G T A A C T G G A C T G A T C G T C A A T G C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T

USF2/MA0526.1/Jaspar

Match Rank:6
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:CATGTGCCAGYCACCT---
--------GGTCACATGAC
 A T G C G T C A G A C T A C T G A C G T A C T G T G A C A T G C C G T A A C T G G A C T G A T C G T C A A T G C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CATGTGCCAGYCACCT
RTCATGTGAC--------
 A C G T A C G T A T G C G T C A G A C T A C T G A C G T A C T G T G A C A T G C C G T A A C T G G A C T G A T C G T C A A T G C G T A C A C G T
T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CATGTGCCAGYCACCT
NNATTGACAGGTGCTT
 A T G C G T C A G A C T A C T G A C G T A C T G T G A C A T G C C G T A A C T G G A C T G A T C G T C A A T G C G T A C A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CATGTGCCAGYCACCT
---ATGCCAGACN---
 A T G C G T C A G A C T A C T G A C G T A C T G T G A C A T G C C G T A A C T G G A C T G A T C G T C A A T G C G T A C A C G T
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.51
Offset:9
Orientation:forward strand
Alignment:CATGTGCCAGYCACCT---
---------NNCACCTGNN
 A T G C G T C A G A C T A C T G A C G T A C T G T G A C A T G C C G T A A C T G G A C T G A T C G T C A A T G C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A