Information for 1-GAGGCCGGTMAGTGTM (Motif 1)

A C T G C G T A C T A G A C T G G T A C G A T C C T A G A T C G A G C T G T A C T C G A A C T G A C G T A C T G A C G T G T A C
Reverse Opposite:
A C T G T G C A G T A C C G T A A G T C A G C T A C T G C T G A T A G C A G T C C A T G A C T G A G T C A G T C A C G T A G T C
p-value:1e-14
log p-value:-3.257e+01
Information Content per bp:1.743
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.6 +/- 19.7bp
Average Position of motif in Background63.3 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCCGGTMAGTGTM
NGAAGC-----------
 A C G T A C T G C G T A C T A G A C T G G T A C G A T C C T A G A T C G A G C T G T A C T C G A A C T G A C G T A C T G A C G T G T A C
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:2
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:GAGGCCGGTMAGTGTM
-------TTAAGTGGN
 A C T G C G T A C T A G A C T G G T A C G A T C C T A G A T C G A G C T G T A C T C G A A C T G A C G T A C T G A C G T G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:GAGGCCGGTMAGTGTM
-------TTAAGTGGT
 A C T G C G T A C T A G A C T G G T A C G A T C C T A G A T C G A G C T G T A C T C G A A C T G A C G T A C T G A C G T G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:GAGGCCGGTMAGTGTM--
------RGTTAGTGCCCY
 A C T G C G T A C T A G A C T G G T A C G A T C C T A G A T C G A G C T G T A C T C G A A C T G A C G T A C T G A C G T G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.49
Offset:0
Orientation:forward strand
Alignment:GAGGCCGGTMAGTGTM
AAGGCAAGTGT-----
 A C T G C G T A C T A G A C T G G T A C G A T C C T A G A T C G A G C T G T A C T C G A A C T G A C G T A C T G A C G T G T A C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GAGGCCGGTMAGTGTM
ARGAGGMCAAAATGW---
 A C G T A C G T A C T G C G T A C T A G A C T G G T A C G A T C C T A G A T C G A G C T G T A C T C G A A C T G A C G T A C T G A C G T G T A C
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.48
Offset:4
Orientation:forward strand
Alignment:GAGGCCGGTMAGTGTM
----CAGGTAAGTAT-
 A C T G C G T A C T A G A C T G G T A C G A T C C T A G A T C G A G C T G T A C T C G A A C T G A C G T A C T G A C G T G T A C
A C G T A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:8
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-GAGGCCGGTMAGTGTM---
NGAGGTCANNGAGTTCANNN
 A C G T A C T G C G T A C T A G A C T G G T A C G A T C C T A G A T C G A G C T G T A C T C G A A C T G A C G T A C T G A C G T G T A C A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.47
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCCGGTMAGTGTM
CTAGGCCT---------
 A C G T A C T G C G T A C T A G A C T G G T A C G A T C C T A G A T C G A G C T G T A C T C G A A C T G A C G T A C T G A C G T G T A C
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.47
Offset:7
Orientation:forward strand
Alignment:GAGGCCGGTMAGTGTM-
-------TTRAGTGSYK
 A C T G C G T A C T A G A C T G G T A C G A T C C T A G A T C G A G C T G T A C T C G A A C T G A C G T A C T G A C G T G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T