Information for 8-GAGCGTCTGTGACCTG (Motif 16)

A C T G C G T A A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G A C T G A C G T A G T C C G T A A G T C C G T A A C T G C G T A A G T C A C T G A G T C A C G T A G T C
p-value:1e-7
log p-value:-1.641e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.8 +/- 28.6bp
Average Position of motif in Background31.5 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAGCGTCTGTGACCTG
GGNGCGNCTGTTNNN--
 A C G T A C T G C G T A A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T A C T G
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.60
Offset:8
Orientation:reverse strand
Alignment:GAGCGTCTGTGACCTG
--------GTGACCTT
 A C T G C G T A A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GAGCGTCTGTGACCTG
---TGTCTGDCACCT-
 A C T G C G T A A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T A C T G
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAGCGTCTGTGACCTG
--CTGTCTGTCACCT-
 A C T G C G T A A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T A C T G
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.58
Offset:9
Orientation:reverse strand
Alignment:GAGCGTCTGTGACCTG
---------TGACCT-
 A C T G C G T A A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAGCGTCTGTGACCTG
TGACCTTTCGTGACCTT
 A C G T A C T G C G T A A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T A C T G
A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.57
Offset:9
Orientation:reverse strand
Alignment:GAGCGTCTGTGACCTG-
---------TGACCTYA
 A C T G C G T A A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GAGCGTCTGTGACCTG
--AGGTCANTGACCTN
 A C T G C G T A A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T A C T G
A C G T A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.55
Offset:9
Orientation:reverse strand
Alignment:GAGCGTCTGTGACCTG---
---------TGACCTTGAT
 A C T G C G T A A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

ESR2/MA0258.2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAGCGTCTGTGACCTG
AGGNCANNGTGACCT-
 A C T G C G T A A C T G A G T C A C T G A C G T A G T C A C G T A C T G A C G T A C T G C G T A A G T C A G T C A C G T A C T G
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T