Information for 3-GCAACAGCGC (Motif 11)

T C A G A T G C T C G A C G T A A T G C C G T A A C T G A G T C A C T G A G T C
Reverse Opposite:
T C A G T A G C A C T G T G A C A C G T A T C G A C G T A G C T A T C G A G T C
p-value:1e-9
log p-value:-2.100e+01
Information Content per bp:1.835
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.14%
Number of Background Sequences with motif168.0
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets58.5 +/- 25.3bp
Average Position of motif in Background48.2 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rhox11/MA0629.1/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GCAACAGCGC---
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T T C A G A T G C T C G A C G T A A T G C C G T A A C T G A G T C A C T G A G T C A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GCAACAGCGC---
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T T C A G A T G C T C G A C G T A A T G C C G T A A C T G A G T C A C T G A G T C A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GCAACAGCGC
--CACAGN--
 T C A G A T G C T C G A C G T A A T G C C G T A A C T G A G T C A C T G A G T C
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GCAACAGCGC
SCCTAGCAACAG---
 A C G T A C G T A C G T A C G T A C G T T C A G A T G C T C G A C G T A A T G C C G T A A C T G A G T C A C T G A G T C
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAACAGCGC
TGGAACAGMA-
 A C G T T C A G A T G C T C G A C G T A A T G C C G T A A C T G A G T C A C T G A G T C
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GCAACAGCGC---
TCNCTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T T C A G A T G C T C G A C G T A A T G C C G T A A C T G A G T C A C T G A G T C A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCAACAGCGC
TTGCAACATN--
 A C G T A C G T T C A G A T G C T C G A C G T A A T G C C G T A A C T G A G T C A C T G A G T C
C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C A C G T A C G T

Tcf21/MA0832.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCAACAGCGC----
GCAACAGCTGTTGT
 T C A G A T G C T C G A C G T A A T G C C G T A A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T
T C A G G A T C C T G A G T C A A G T C G T C A A C T G A G T C A C G T A C T G A C G T G A C T T C A G A G C T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GCAACAGCGC
----CAGCC-
 T C A G A T G C T C G A C G T A A T G C C G T A A C T G A G T C A C T G A G T C
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCAACAGCGC
CCAGGAACAG---
 A C G T A C G T A C G T T C A G A T G C T C G A C G T A A T G C C G T A A C T G A G T C A C T G A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T