Homer Known Motif Enrichment Results (hs_NEUROD1ChIPseqinD28_D283_undef_NEUROD1_SRX2436023_homermotifs_10_13_16)

Homer de novo Motif Results
Gene Ontology Enrichment Results
Known Motif Enrichment Results (txt file)
Total Target Sequences = 783, Total Background Sequences = 46743
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File SVG
1 A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer1e-82-1.889e+020.0000359.045.85%7647.216.36%motif file (matrix) svg
2 T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer1e-76-1.755e+020.0000247.031.55%3896.48.34%motif file (matrix) svg
3 A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer1e-74-1.714e+020.0000195.024.90%2435.35.21%motif file (matrix) svg
4 C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer1e-51-1.185e+020.0000429.054.79%13449.128.77%motif file (matrix) svg
5 T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer1e-16-3.718e+010.000075.09.58%1480.73.17%motif file (matrix) svg
6 C T G A T G A C T G A C C G T A A C G T T G A C A G C T C T A G A C G T G A C T Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer1e-15-3.618e+010.0000140.017.88%4029.68.62%motif file (matrix) svg
7 T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer1e-15-3.549e+010.000092.011.75%2137.94.57%motif file (matrix) svg
8 T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer1e-13-3.191e+010.0000113.014.43%3108.26.65%motif file (matrix) svg
9 C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer1e-9-2.300e+010.000074.09.45%1943.64.16%motif file (matrix) svg
10 C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer1e-9-2.196e+010.0000102.013.03%3165.96.77%motif file (matrix) svg
11 G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer1e-8-2.055e+010.000089.011.37%2684.65.74%motif file (matrix) svg
12 T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C G T A G T C Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer1e-8-2.053e+010.0000146.018.65%5285.611.31%motif file (matrix) svg
13 C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer1e-7-1.806e+010.000094.012.01%3054.86.54%motif file (matrix) svg
14 G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer1e-7-1.715e+010.0000136.017.37%5085.210.88%motif file (matrix) svg
15 C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer1e-7-1.631e+010.0000246.031.42%10837.223.18%motif file (matrix) svg
16 C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer1e-7-1.618e+010.0000158.020.18%6261.013.39%motif file (matrix) svg
17 G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer1e-6-1.555e+010.000060.07.66%1734.13.71%motif file (matrix) svg
18 A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer1e-6-1.467e+010.000028.03.58%553.51.18%motif file (matrix) svg
19 T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer1e-6-1.446e+010.0000101.012.90%3637.37.78%motif file (matrix) svg
20 T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer1e-5-1.281e+010.000064.08.17%2065.14.42%motif file (matrix) svg
21 G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer1e-5-1.269e+010.000173.09.32%2476.75.30%motif file (matrix) svg
22 A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer1e-4-1.123e+010.000291.011.62%3438.87.36%motif file (matrix) svg
23 T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer1e-4-1.098e+010.000358.07.41%1921.64.11%motif file (matrix) svg
24 A C G T T C G A T C G A A G T C G T C A T A C G A T G C A C G T A C T G A G C T Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer1e-4-1.032e+010.000544.05.62%1351.32.89%motif file (matrix) svg
25 C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer1e-3-8.923e+000.001972.09.20%2737.35.86%motif file (matrix) svg
26 A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer1e-3-8.561e+000.0027125.015.96%5445.011.65%motif file (matrix) svg
27 G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer1e-3-8.382e+000.00318.01.02%94.00.20%motif file (matrix) svg
28 C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer1e-3-8.294e+000.003355.07.02%1986.34.25%motif file (matrix) svg
29 T C A G A G C T A T G C C G T A A G T C T C A G A C G T A T C G T C G A A G T C G A T C T G A C TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer1e-3-7.728e+000.00557.00.89%79.20.17%motif file (matrix) svg
30 T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-3-7.591e+000.006129.03.70%872.71.87%motif file (matrix) svg
31 T A G C T A G C G C A T C A T G A C T G G C T A C G T A A C G T A C T G G A T C TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer1e-3-7.584e+000.006144.05.62%1535.03.28%motif file (matrix) svg
32 C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer1e-3-7.390e+000.0070131.016.73%5928.512.68%motif file (matrix) svg
33 T G C A C T G A A T G C G T C A A C G T A T G C A C G T A C T G A C T G T G C A ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer1e-3-7.209e+000.008229.03.70%894.51.91%motif file (matrix) svg
34 A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer1e-3-7.145e+000.008421.02.68%567.51.21%motif file (matrix) svg
35 C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer1e-3-7.050e+000.009044.05.62%1576.23.37%motif file (matrix) svg
36 C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer1e-3-6.990e+000.009368.08.68%2736.45.85%motif file (matrix) svg
37 C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer1e-3-6.928e+000.009638.04.85%1310.82.80%motif file (matrix) svg
38 G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer1e-2-6.607e+000.012918.02.30%473.71.01%motif file (matrix) svg
39 C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer1e-2-6.570e+000.0131137.017.50%6380.113.65%motif file (matrix) svg
40 T A C G T C G A T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer1e-2-6.564e+000.013128.03.58%890.11.90%motif file (matrix) svg
41 C T A G A C T G C T A G T C A G T C A G T A C G C T A G A C T G Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-2-6.419e+000.014565.08.30%2650.25.67%motif file (matrix) svg
42 A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer1e-2-6.251e+000.016777.09.83%3275.77.01%motif file (matrix) svg
43 T C G A T G A C A G T C C G T A A G T C C T A G A C G T A C T G A C T G A G C T A G T C G C A T Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer1e-2-6.230e+000.016726.03.32%824.91.76%motif file (matrix) svg
44 A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer1e-2-6.109e+000.018438.04.85%1374.72.94%motif file (matrix) svg
45 A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer1e-2-5.922e+000.021761.07.79%2507.75.36%motif file (matrix) svg
46 C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer1e-2-5.852e+000.022753.06.77%2118.34.53%motif file (matrix) svg
47 T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer1e-2-5.756e+000.024531.03.96%1079.12.31%motif file (matrix) svg
48 T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer1e-2-5.536e+000.029910.01.28%215.70.46%motif file (matrix) svg
49 C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer1e-2-5.522e+000.029930.03.83%1051.52.25%motif file (matrix) svg
50 A T G C A T G C A T C G T A C G A G C T A G T C G C T A A G T C T C A G G A C T A C T G T C G A E-box(bHLH)/Promoter/Homer1e-2-5.507e+000.02996.00.77%88.40.19%motif file (matrix) svg
51 T C A G A C G T A G T C T C G A A G T C T C A G G C A T C T A G C T A G A G C T Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer1e-2-5.502e+000.029915.01.92%404.60.87%motif file (matrix) svg
52 A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer1e-2-5.416e+000.031168.08.68%2923.86.25%motif file (matrix) svg
53 T A G C C T A G T C G A G A C T A C T G C T G A A G T C T C A G G C A T T G A C C T G A A G C T Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer1e-2-5.374e+000.031821.02.68%660.91.41%motif file (matrix) svg
54 A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer1e-2-5.344e+000.0322129.016.48%6166.713.19%motif file (matrix) svg
55 C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer1e-2-5.339e+000.03227.00.89%122.00.26%motif file (matrix) svg
56 A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer1e-2-5.243e+000.0344201.025.67%10177.921.77%motif file (matrix) svg
57 T A C G T C A G A G C T A T G C C G T A A G T C T C A G A C G T A C T G T C G A USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer1e-2-5.156e+000.036819.02.43%587.11.26%motif file (matrix) svg
58 T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer1e-2-5.147e+000.0368103.013.15%4799.510.27%motif file (matrix) svg
59 A T G C A G C T T C A G T G A C T C A G A T G C T G C A A C G T A T C G G A T C A C T G A G T C NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer1e-2-5.102e+000.037512.01.53%304.90.65%motif file (matrix) svg
60 C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer1e-2-5.056e+000.038615.01.92%425.80.91%motif file (matrix) svg
61 T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer1e-2-4.888e+000.045057.07.28%2430.75.20%motif file (matrix) svg
62 C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-2-4.809e+000.0479232.029.63%12043.625.77%motif file (matrix) svg
63 A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer1e-2-4.770e+000.04906.00.77%103.10.22%motif file (matrix) svg
64 A G T C G C A T C G T A C G T A G T A C A C G T A C T G G A T C G A T C T C G A BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer1e-2-4.736e+000.049975.09.58%3382.17.24%motif file (matrix) svg
65 A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer1e-2-4.707e+000.050690.011.49%4180.58.94%motif file (matrix) svg
66 A G C T T G A C C G A T C G A T C T A G A C G T C A G T C A G T G C T A A G T C FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer1e-2-4.658e+000.052358.07.41%2511.35.37%motif file (matrix) svg
67 T C G A C G T A A G T C A G C T C G T A A G T C T C G A G C T A G A C T C G A T A G T C A G T C A G T C C T G A T C A G T G C A T C G A C A G T A T C G A G T C GFY-Staf(?,Zf)/Promoter/Homer1e-2-4.631e+000.05305.00.64%76.40.16%motif file (matrix) svg
68 C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer1e-2-4.617e+000.053024.03.07%845.71.81%motif file (matrix) svg
69 A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer1e-2-4.609e+000.053026.03.32%938.12.01%motif file (matrix) svg