Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-82 | -1.889e+02 | 0.0000 | 359.0 | 45.85% | 7647.2 | 16.36% | motif file (matrix) |
svg |
2 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-76 | -1.755e+02 | 0.0000 | 247.0 | 31.55% | 3896.4 | 8.34% | motif file (matrix) |
svg |
3 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-74 | -1.714e+02 | 0.0000 | 195.0 | 24.90% | 2435.3 | 5.21% | motif file (matrix) |
svg |
4 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-51 | -1.185e+02 | 0.0000 | 429.0 | 54.79% | 13449.1 | 28.77% | motif file (matrix) |
svg |
5 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-16 | -3.718e+01 | 0.0000 | 75.0 | 9.58% | 1480.7 | 3.17% | motif file (matrix) |
svg |
6 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-15 | -3.618e+01 | 0.0000 | 140.0 | 17.88% | 4029.6 | 8.62% | motif file (matrix) |
svg |
7 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-15 | -3.549e+01 | 0.0000 | 92.0 | 11.75% | 2137.9 | 4.57% | motif file (matrix) |
svg |
8 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-13 | -3.191e+01 | 0.0000 | 113.0 | 14.43% | 3108.2 | 6.65% | motif file (matrix) |
svg |
9 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-9 | -2.300e+01 | 0.0000 | 74.0 | 9.45% | 1943.6 | 4.16% | motif file (matrix) |
svg |
10 |
| Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer | 1e-9 | -2.196e+01 | 0.0000 | 102.0 | 13.03% | 3165.9 | 6.77% | motif file (matrix) |
svg |
11 |
| Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer | 1e-8 | -2.055e+01 | 0.0000 | 89.0 | 11.37% | 2684.6 | 5.74% | motif file (matrix) |
svg |
12 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-8 | -2.053e+01 | 0.0000 | 146.0 | 18.65% | 5285.6 | 11.31% | motif file (matrix) |
svg |
13 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-7 | -1.806e+01 | 0.0000 | 94.0 | 12.01% | 3054.8 | 6.54% | motif file (matrix) |
svg |
14 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-7 | -1.715e+01 | 0.0000 | 136.0 | 17.37% | 5085.2 | 10.88% | motif file (matrix) |
svg |
15 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-7 | -1.631e+01 | 0.0000 | 246.0 | 31.42% | 10837.2 | 23.18% | motif file (matrix) |
svg |
16 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-7 | -1.618e+01 | 0.0000 | 158.0 | 20.18% | 6261.0 | 13.39% | motif file (matrix) |
svg |
17 |
| Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-6 | -1.555e+01 | 0.0000 | 60.0 | 7.66% | 1734.1 | 3.71% | motif file (matrix) |
svg |
18 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-6 | -1.467e+01 | 0.0000 | 28.0 | 3.58% | 553.5 | 1.18% | motif file (matrix) |
svg |
19 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-6 | -1.446e+01 | 0.0000 | 101.0 | 12.90% | 3637.3 | 7.78% | motif file (matrix) |
svg |
20 |
| MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-5 | -1.281e+01 | 0.0000 | 64.0 | 8.17% | 2065.1 | 4.42% | motif file (matrix) |
svg |
21 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-5 | -1.269e+01 | 0.0001 | 73.0 | 9.32% | 2476.7 | 5.30% | motif file (matrix) |
svg |
22 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-4 | -1.123e+01 | 0.0002 | 91.0 | 11.62% | 3438.8 | 7.36% | motif file (matrix) |
svg |
23 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-4 | -1.098e+01 | 0.0003 | 58.0 | 7.41% | 1921.6 | 4.11% | motif file (matrix) |
svg |
24 |
| Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-4 | -1.032e+01 | 0.0005 | 44.0 | 5.62% | 1351.3 | 2.89% | motif file (matrix) |
svg |
25 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-3 | -8.923e+00 | 0.0019 | 72.0 | 9.20% | 2737.3 | 5.86% | motif file (matrix) |
svg |
26 |
| Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer | 1e-3 | -8.561e+00 | 0.0027 | 125.0 | 15.96% | 5445.0 | 11.65% | motif file (matrix) |
svg |
27 |
| Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-3 | -8.382e+00 | 0.0031 | 8.0 | 1.02% | 94.0 | 0.20% | motif file (matrix) |
svg |
28 |
| Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-3 | -8.294e+00 | 0.0033 | 55.0 | 7.02% | 1986.3 | 4.25% | motif file (matrix) |
svg |
29 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-3 | -7.728e+00 | 0.0055 | 7.0 | 0.89% | 79.2 | 0.17% | motif file (matrix) |
svg |
30 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-3 | -7.591e+00 | 0.0061 | 29.0 | 3.70% | 872.7 | 1.87% | motif file (matrix) |
svg |
31 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-3 | -7.584e+00 | 0.0061 | 44.0 | 5.62% | 1535.0 | 3.28% | motif file (matrix) |
svg |
32 |
| Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-3 | -7.390e+00 | 0.0070 | 131.0 | 16.73% | 5928.5 | 12.68% | motif file (matrix) |
svg |
33 |
| ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer | 1e-3 | -7.209e+00 | 0.0082 | 29.0 | 3.70% | 894.5 | 1.91% | motif file (matrix) |
svg |
34 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-3 | -7.145e+00 | 0.0084 | 21.0 | 2.68% | 567.5 | 1.21% | motif file (matrix) |
svg |
35 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-3 | -7.050e+00 | 0.0090 | 44.0 | 5.62% | 1576.2 | 3.37% | motif file (matrix) |
svg |
36 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-3 | -6.990e+00 | 0.0093 | 68.0 | 8.68% | 2736.4 | 5.85% | motif file (matrix) |
svg |
37 |
| Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-3 | -6.928e+00 | 0.0096 | 38.0 | 4.85% | 1310.8 | 2.80% | motif file (matrix) |
svg |
38 |
| Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer | 1e-2 | -6.607e+00 | 0.0129 | 18.0 | 2.30% | 473.7 | 1.01% | motif file (matrix) |
svg |
39 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-2 | -6.570e+00 | 0.0131 | 137.0 | 17.50% | 6380.1 | 13.65% | motif file (matrix) |
svg |
40 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-2 | -6.564e+00 | 0.0131 | 28.0 | 3.58% | 890.1 | 1.90% | motif file (matrix) |
svg |
41 |
| Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.419e+00 | 0.0145 | 65.0 | 8.30% | 2650.2 | 5.67% | motif file (matrix) |
svg |
42 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-2 | -6.251e+00 | 0.0167 | 77.0 | 9.83% | 3275.7 | 7.01% | motif file (matrix) |
svg |
43 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.230e+00 | 0.0167 | 26.0 | 3.32% | 824.9 | 1.76% | motif file (matrix) |
svg |
44 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-2 | -6.109e+00 | 0.0184 | 38.0 | 4.85% | 1374.7 | 2.94% | motif file (matrix) |
svg |
45 |
| Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.922e+00 | 0.0217 | 61.0 | 7.79% | 2507.7 | 5.36% | motif file (matrix) |
svg |
46 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-2 | -5.852e+00 | 0.0227 | 53.0 | 6.77% | 2118.3 | 4.53% | motif file (matrix) |
svg |
47 |
| ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.756e+00 | 0.0245 | 31.0 | 3.96% | 1079.1 | 2.31% | motif file (matrix) |
svg |
48 |
| HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer | 1e-2 | -5.536e+00 | 0.0299 | 10.0 | 1.28% | 215.7 | 0.46% | motif file (matrix) |
svg |
49 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-2 | -5.522e+00 | 0.0299 | 30.0 | 3.83% | 1051.5 | 2.25% | motif file (matrix) |
svg |
50 |
| E-box(bHLH)/Promoter/Homer | 1e-2 | -5.507e+00 | 0.0299 | 6.0 | 0.77% | 88.4 | 0.19% | motif file (matrix) |
svg |
51 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -5.502e+00 | 0.0299 | 15.0 | 1.92% | 404.6 | 0.87% | motif file (matrix) |
svg |
52 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-2 | -5.416e+00 | 0.0311 | 68.0 | 8.68% | 2923.8 | 6.25% | motif file (matrix) |
svg |
53 |
| Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer | 1e-2 | -5.374e+00 | 0.0318 | 21.0 | 2.68% | 660.9 | 1.41% | motif file (matrix) |
svg |
54 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-2 | -5.344e+00 | 0.0322 | 129.0 | 16.48% | 6166.7 | 13.19% | motif file (matrix) |
svg |
55 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-2 | -5.339e+00 | 0.0322 | 7.0 | 0.89% | 122.0 | 0.26% | motif file (matrix) |
svg |
56 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-2 | -5.243e+00 | 0.0344 | 201.0 | 25.67% | 10177.9 | 21.77% | motif file (matrix) |
svg |
57 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.156e+00 | 0.0368 | 19.0 | 2.43% | 587.1 | 1.26% | motif file (matrix) |
svg |
58 |
| Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer | 1e-2 | -5.147e+00 | 0.0368 | 103.0 | 13.15% | 4799.5 | 10.27% | motif file (matrix) |
svg |
59 |
| NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -5.102e+00 | 0.0375 | 12.0 | 1.53% | 304.9 | 0.65% | motif file (matrix) |
svg |
60 |
| Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer | 1e-2 | -5.056e+00 | 0.0386 | 15.0 | 1.92% | 425.8 | 0.91% | motif file (matrix) |
svg |
61 |
| Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer | 1e-2 | -4.888e+00 | 0.0450 | 57.0 | 7.28% | 2430.7 | 5.20% | motif file (matrix) |
svg |
62 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -4.809e+00 | 0.0479 | 232.0 | 29.63% | 12043.6 | 25.77% | motif file (matrix) |
svg |
63 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-2 | -4.770e+00 | 0.0490 | 6.0 | 0.77% | 103.1 | 0.22% | motif file (matrix) |
svg |
64 |
| BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer | 1e-2 | -4.736e+00 | 0.0499 | 75.0 | 9.58% | 3382.1 | 7.24% | motif file (matrix) |
svg |
65 |
| Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer | 1e-2 | -4.707e+00 | 0.0506 | 90.0 | 11.49% | 4180.5 | 8.94% | motif file (matrix) |
svg |
66 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-2 | -4.658e+00 | 0.0523 | 58.0 | 7.41% | 2511.3 | 5.37% | motif file (matrix) |
svg |
67 |
| GFY-Staf(?,Zf)/Promoter/Homer | 1e-2 | -4.631e+00 | 0.0530 | 5.0 | 0.64% | 76.4 | 0.16% | motif file (matrix) |
svg |
68 |
| NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-2 | -4.617e+00 | 0.0530 | 24.0 | 3.07% | 845.7 | 1.81% | motif file (matrix) |
svg |
69 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-2 | -4.609e+00 | 0.0530 | 26.0 | 3.32% | 938.1 | 2.01% | motif file (matrix) |
svg |