Information for 5-GCGGCGTCTATGA (Motif 8)

A C T G A T G C A T C G A T C G A G T C A C T G A G C T A G T C A C G T C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A C G A T C G T A A C T G C T G A A G T C A C T G A T G C A T G C A T C G G T A C
p-value:1e-11
log p-value:-2.700e+01
Information Content per bp:1.908
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.3 +/- 16.1bp
Average Position of motif in Background27.7 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0131.1_Gmeb1_2/Jaspar

Match Rank:1
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCGGCGTCTATGA
TGGGCGACGTCGTTAA
 A C G T A C G T A C G T A C T G A T G C A T C G A T C G A G T C A C T G A G C T A G T C A C G T C G T A A C G T A C T G C G T A
C A G T C A T G T C A G A C T G G T A C T C A G G C T A T A G C A C T G C A G T A G T C C A T G G A C T A G C T G T C A G C T A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GCGGCGTCTATGA---
------CCTTTGATGT
 A C T G A T G C A T C G A T C G A G T C A C T G A G C T A G T C A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GCGGCGTCTATGA
NNGGCCACGCCTTTN-
 A C G T A C G T A C G T A C T G A T G C A T C G A T C G A G T C A C T G A G C T A G T C A C G T C G T A A C G T A C T G C G T A
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:4
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GCGGCGTCTATGA-----
----TNCCTTTGATCTTN
 A C T G A T G C A T C G A T C G A G T C A C T G A G C T A G T C A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A G C T A G T C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T A G C T G A C T

PB0179.1_Sp100_2/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCGGCGTCTATGA-
TCCGTCGCTTAAAAG
 A C G T A C T G A T G C A T C G A T C G A G T C A C T G A G C T A G T C A C G T C G T A A C G T A C T G C G T A A C G T
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GCGGCGTCTATGA---
----TNCCTTTGATGT
 A C T G A T G C A T C G A T C G A G T C A C T G A G C T A G T C A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A T G C A G T C A G T C A G C T A C G T A C G T T A C G C G T A C G A T T A C G G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GCGGCGTCTATGA
-VBSYGTCTGG--
 A C T G A T G C A T C G A T C G A G T C A C T G A G C T A G T C A C G T C G T A A C G T A C T G C G T A
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:8
Score:0.51
Offset:8
Orientation:forward strand
Alignment:GCGGCGTCTATGA-
--------CATGAC
 A C T G A T G C A T C G A T C G A G T C A C T G A G C T A G T C A C G T C G T A A C G T A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C

PB0025.1_Glis2_1/Jaspar

Match Rank:9
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----GCGGCGTCTATGA
NTNTGGGGGGTCNNNA-
 A C G T A C G T A C G T A C G T A C T G A T G C A T C G A T C G A G T C A C T G A G C T A G T C A C G T C G T A A C G T A C T G C G T A
G T A C G A C T T C A G A C G T C T A G C T A G C A T G C A T G A C T G A C T G A C G T T G A C A T C G C G T A C G A T C T G A A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:10
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:GCGGCGTCTATGA---
------CCTTTGAWGT
 A C T G A T G C A T C G A T C G A G T C A C T G A G C T A G T C A C G T C G T A A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T