Information for 2-GAGGTGAMACACACAG (Motif 5)

A C T G G T C A A C T G A C T G A G C T A C T G C T G A T G A C C G T A T G A C C G T A A T G C C G T A G T A C G C T A C T A G
Reverse Opposite:
A G T C C A G T A C T G A C G T T A C G A C G T A C T G C G A T A C T G A G C T A G T C T C G A A G T C A G T C A C G T A G T C
p-value:1e-14
log p-value:-3.235e+01
Information Content per bp:1.770
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.6 +/- 21.6bp
Average Position of motif in Background53.5 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GAGGTGAMACACACAG
-AGGTGNCAGACAG--
 A C T G G T C A A C T G A C T G A G C T A C T G C T G A T G A C C G T A T G A C C G T A A T G C C G T A G T A C G C T A C T A G
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGGTGAMACACACAG
-AGGTGHCAGACA---
 A C T G G T C A A C T G A C T G A G C T A C T G C T G A T G A C C G T A T G A C C G T A A T G C C G T A G T A C G C T A C T A G
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAGGTGAMACACACAG
-AGGTGTCA-------
 A C T G G T C A A C T G A C T G A G C T A C T G C T G A T G A C C G T A T G A C C G T A A T G C C G T A G T A C G C T A C T A G
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAGGTGAMACACACAG
-AGGTGTGAAM-----
 A C T G G T C A A C T G A C T G A G C T A C T G C T G A T G A C C G T A T G A C C G T A A T G C C G T A G T A C G C T A C T A G
A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAGGTGAMACACACAG
CGGAAGTGAAAC------
 A C G T A C G T A C T G G T C A A C T G A C T G A G C T A C T G C T G A T G A C C G T A T G A C C G T A A T G C C G T A G T A C G C T A C T A G
T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T

FOSL1/MA0477.1/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GAGGTGAMACACACAG
--GGTGACTCATG---
 A C T G G T C A A C T G A C T G A G C T A C T G C T G A T G A C C G T A T G A C C G T A A T G C C G T A G T A C G C T A C T A G
A C G T A C G T C T A G T C A G A C G T A C T G C G T A T A G C A C G T G T A C C G T A A C G T T A C G A C G T A C G T A C G T

PB0142.1_Jundm2_2/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAGGTGAMACACACAG
NNGGTGACTCATCANN
 A C T G G T C A A C T G A C T G A G C T A C T G C T G A T G A C C G T A T G A C C G T A A T G C C G T A G T A C G C T A C T A G
C A G T G A C T C A T G T C A G A G C T A C T G C G T A A T G C C A G T T G A C C T G A A G C T G A T C T G C A G T C A A C G T

JUN(var.2)/MA0489.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAGGTGAMACACACAG
AGGAGATGACTCAT----
 A C G T A C G T A C T G G T C A A C T G A C T G A G C T A C T G C T G A T G A C C G T A T G A C C G T A A T G C C G T A G T A C G C T A C T A G
C T G A C T A G C T A G C T G A C T A G T C G A A C G T A C T G C G T A A T G C C G A T G T A C C G T A A C G T A C G T A C G T A C G T A C G T

TBX5/MA0807.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAGGTGAMACACACAG
-AGGTGTGA-------
 A C T G G T C A A C T G A C T G A G C T A C T G C T G A T G A C C G T A T G A C C G T A A T G C C G T A G T A C G C T A C T A G
A C G T C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAGGTGAMACACACAG
AAGGTGTGAAA-----
 A C T G G T C A A C T G A C T G A G C T A C T G C T G A T G A C C G T A T G A C C G T A A T G C C G T A G T A C G C T A C T A G
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T