Information for 10-CGGTCGCAGCCAT (Motif 17)

A T G C A T C G A C T G A G C T A T G C A C T G A G T C C T G A A C T G A G T C A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C T G A G T C A G C T A C T G A G T C A T C G C T G A A G T C A T G C A T C G
p-value:1e-9
log p-value:-2.181e+01
Information Content per bp:1.866
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.4 +/- 16.8bp
Average Position of motif in Background32.9 +/- 1.7bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CGGTCGCAGCCAT----
-----GCNGCCATCTTG
 A T G C A T C G A C T G A G C T A T G C A C T G A G T C C T G A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:CGGTCGCAGCCAT----
-----GCCGCCATCTTG
 A T G C A T C G A C T G A G C T A T G C A C T G A G T C C T G A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CGGTCGCAGCCAT--
----GTCCGCCATTA
 A T G C A T C G A C T G A G C T A T G C A C T G A G T C C T G A A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.58
Offset:7
Orientation:forward strand
Alignment:CGGTCGCAGCCAT----
-------GGCCATTAAC
 A T G C A T C G A C T G A G C T A T G C A C T G A G T C C T G A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGGTCGCAGCCAT
--GCCACACCCA-
 A T G C A T C G A C T G A G C T A T G C A C T G A G T C C T G A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CGGTCGCAGCCAT
-----BCAGACWA
 A T G C A T C G A C T G A G C T A T G C A C T G A G T C C T G A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CGGTCGCAGCCAT
-GGCCACRCCCMK
 A T G C A T C G A C T G A G C T A T G C A C T G A G T C C T G A A C T G A G T C A G T C C G T A A C G T
A C G T C T A G C T A G T G A C G T A C T G C A A G T C C T A G A G T C A G T C A G T C G T C A C A T G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CGGTCGCAGCCAT
AGGTGNCAGACAG
 A T G C A T C G A C T G A G C T A T G C A C T G A G T C C T G A A C T G A G T C A G T C C G T A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:CGGTCGCAGCCAT
-------TGCCAA
 A T G C A T C G A C T G A G C T A T G C A C T G A G T C C T G A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CGGTCGCAGCCAT
AGGTGHCAGACA-
 A T G C A T C G A C T G A G C T A T G C A C T G A G T C C T G A A C T G A G T C A G T C C G T A A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T