Information for 8-CAGGCTCTTA (Motif 14)

G T A C C T G A C T A G T C A G A G T C C G A T A G T C A C G T A G C T C G T A
Reverse Opposite:
A C G T C T G A C G T A C T A G C G T A A C T G A G T C A G T C G A C T A C T G
p-value:1e-10
log p-value:-2.371e+01
Information Content per bp:1.857
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif59.2
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets46.6 +/- 28.8bp
Average Position of motif in Background53.4 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CAGGCTCTTA-
--ACCACTTAA
 G T A C C T G A C T A G T C A G A G T C C G A T A G T C A C G T A G C T C G T A A C G T
A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CAGGCTCTTA-
-AAGCACTTAA
 G T A C C T G A C T A G T C A G A G T C C G A T A G T C A C G T A G C T C G T A A C G T
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CAGGCTCTTA-
-AASCACTCAA
 G T A C C T G A C T A G T C A G A G T C C G A T A G T C A C G T A G C T C G T A A C G T
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

ISL2/MA0914.1/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CAGGCTCTTA-
---GCACTTAA
 G T A C C T G A C T A G T C A G A G T C C G A T A G T C A C G T A G C T C G T A A C G T
A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CAGGCTCTTA-
--ACCACTTAA
 G T A C C T G A C T A G T C A G A G T C C G A T A G T C A C G T A G C T C G T A A C G T
A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CAGGCTCTTA--
--RSCACTYRAG
 G T A C C T G A C T A G T C A G A G T C C G A T A G T C A C G T A G C T C G T A A C G T A C G T
A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Barhl1/MA0877.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CAGGCTCTTA--
--NNCAATTANN
 G T A C C T G A C T A G T C A G A G T C C G A T A G T C A C G T A G C T C G T A A C G T A C G T
A C G T A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

PH0004.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAGGCTCTTA-----
CATAACCACTTAACAAC
 A C G T A C G T G T A C C T G A C T A G T C A G A G T C C G A T A G T C A C G T A G C T C G T A A C G T A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Nkx2-5/MA0063.1/Jaspar

Match Rank:9
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CAGGCTCTTA-
----CAATTAA
 G T A C C T G A C T A G T C A G A G T C C G A T A G T C A C G T A G C T C G T A A C G T
A C G T A C G T A C G T A C G T G T A C C G T A G T C A A C G T A C G T C T G A G C T A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CAGGCTCTTA-
---BCMATTAG
 G T A C C T G A C T A G T C A G A G T C C G A T A G T C A C G T A G C T C G T A A C G T
A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G