Information for 6-CGGCGTCACG (Motif 12)

A G T C A T C G A C T G G T A C A C T G A C G T A G T C C G T A A G T C A T C G
Reverse Opposite:
T A G C A C T G A C G T A C T G C G T A G T A C A C T G A G T C A T G C C T A G
p-value:1e-11
log p-value:-2.595e+01
Information Content per bp:1.872
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif29.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets45.4 +/- 25.6bp
Average Position of motif in Background44.8 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CGGCGTCACG-
---AGTCACGC
 A G T C A T C G A C T G G T A C A C T G A C G T A G T C C G T A A G T C A T C G A C G T
A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CGGCGTCACG---
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T A G T C A T C G A C T G G T A C A C T G A C G T A G T C C G T A A G T C A T C G A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CGGCGTCACG--
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C G T A G T C A T C G A C T G G T A C A C T G A C G T A G T C C G T A A G T C A T C G A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

CREB1/MA0018.2/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CGGCGTCACG
TGACGTCA--
 A G T C A T C G A C T G G T A C A C T G A C G T A G T C C G T A A G T C A T C G
G C A T A C T G C T G A A G T C A T C G A C G T A T G C T C G A A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CGGCGTCACG--
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A C G T A G T C A T C G A C T G G T A C A C T G A C G T A G T C C G T A A G T C A T C G A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

Arntl/MA0603.1/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CGGCGTCACG---
---GGTCACGTGC
 A G T C A T C G A C T G G T A C A C T G A C G T A G T C C G T A A G T C A T C G A C G T A C G T A C G T
A C G T A C G T A C G T C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C

PB0113.1_E2F3_2/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CGGCGTCACG---
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A C G T A G T C A T C G A C T G G T A C A C T G A C G T A G T C C G T A A G T C A T C G A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

Mitf/MA0620.1/Jaspar

Match Rank:8
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CGGCGTCACG---
---GGTCACGTGG
 A G T C A T C G A C T G G T A C A C T G A C G T A G T C C G T A A G T C A T C G A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G

Atf1/MA0604.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGGCGTCACG
-TACGTCAT-
 A G T C A T C G A C T G G T A C A C T G A C G T A G T C C G T A A G T C A T C G
A C G T A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T A C G T

E-box(bHLH)/Promoter/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGGCGTCACG---
-CCGGTCACGTGA
 A G T C A T C G A C T G G T A C A C T G A C G T A G T C C G T A A G T C A T C G A C G T A C G T A C G T
A C G T A T G C A T G C A T C G T A C G A G C T A G T C G C T A A G T C T C A G G A C T A C T G T C G A