Information for 6-CGTGKSWTTGMGA (Motif 8)

A G T C A C T G A C G T A C T G A C T G A T C G G C A T A C G T A C G T A C T G T G A C A T C G C G T A
Reverse Opposite:
A C G T A T G C A C T G A G T C C G T A C G T A C G T A A T G C G T A C A G T C C G T A A G T C A C T G
p-value:1e-11
log p-value:-2.585e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.8 +/- 21.3bp
Average Position of motif in Background48.3 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGTGKSWTTGMGA
BNTGDCCTTG---
 A G T C A C T G A C G T A C T G A C T G A T C G G C A T A C G T A C G T A C T G T G A C A T C G C G T A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CGTGKSWTTGMGA
NNCGCGTGNN-------
 A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G A C T G A T C G G C A T A C G T A C G T A C T G T G A C A T C G C G T A
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CGTGKSWTTGMGA
GGACGTGC--------
 A C G T A C G T A C G T A G T C A C T G A C G T A C T G A C T G A T C G G C A T A C G T A C G T A C T G T G A C A T C G C G T A
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGTGKSWTTGMGA
TGCGTG---------
 A C G T A C G T A G T C A C T G A C G T A C T G A C T G A T C G G C A T A C G T A C G T A C T G T G A C A T C G C G T A
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGTGKSWTTGMGA
--TGACCTTGAN-
 A G T C A C T G A C G T A C T G A C T G A T C G G C A T A C G T A C G T A C T G T G A C A T C G C G T A
A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CGTGKSWTTGMGA
TTGCGTGCVA------
 A C G T A C G T A C G T A G T C A C T G A C G T A C T G A C T G A T C G G C A T A C G T A C G T A C T G T G A C A T C G C G T A
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGTGKSWTTGMGA
--TGACCTTGAV-
 A G T C A C T G A C G T A C T G A C T G A T C G G C A T A C G T A C G T A C T G T G A C A T C G C G T A
A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T

XBP1/MA0844.1/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGKSWTTGMGA
GATGACGTGGCANT----
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G A C T G A T C G G C A T A C G T A C G T A C T G T G A C A T C G C G T A
T C A G T G C A G A C T A C T G T C G A G A T C C T A G G A C T T C A G C A T G G T A C T G C A G A C T G C A T A C G T A C G T A C G T A C G T

Arnt/MA0004.1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CGTGKSWTTGMGA
CACGTG---------
 A C G T A C G T A G T C A C T G A C G T A C T G A C T G A T C G G C A T A C G T A C G T A C T G T G A C A T C G C G T A
G T A C C T G A A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CGTGKSWTTGMGA
CACGTGGN-------
 A C G T A C G T A G T C A C T G A C G T A C T G A C T G A T C G G C A T A C G T A C G T A C T G T G A C A T C G C G T A
G T A C C T G A A G T C C T A G G A C T A C T G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T