Information for 4-GCACGGGACC (Motif 11)

T C A G G T A C G T C A A T G C A C T G T A C G A C T G C G T A A G T C A G T C
Reverse Opposite:
A C T G C T A G G C A T A G T C A T G C T G A C A T C G C A G T A C T G A G T C
p-value:1e-10
log p-value:-2.309e+01
Information Content per bp:1.834
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.25%
Number of Background Sequences with motif372.8
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets51.5 +/- 29.0bp
Average Position of motif in Background47.2 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL011.1_XCPE1/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCACGGGACC
GGGCGGGACC
 T C A G G T A C G T C A A T G C A C T G T A C G A C T G C G T A A G T C A G T C
A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C

Arntl/MA0603.1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCACGGGACC
NCACGTGACN
 T C A G G T A C G T C A A T G C A C T G T A C G A C T G C G T A A G T C A G T C
C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C

USF1/MA0093.2/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GCACGGGACC
GCCACGTGACC
 A C G T T C A G G T A C G T C A A T G C A C T G T A C G A C T G C G T A A G T C A G T C
T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C

E-box(bHLH)/Promoter/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GCACGGGACC--
TCACGTGACCGG
 T C A G G T A C G T C A A T G C A C T G T A C G A C T G C G T A A G T C A G T C A C G T A C G T
A G C T A G T C C G T A A G T C T C A G C G A T A C T G T C G A A T G C T A G C T A C G T A C G

TFE3/MA0831.1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GCACGGGACC
ATCACGTGAC-
 A C G T T C A G G T A C G T C A A T G C A C T G T A C G A C T G C G T A A G T C A G T C
T C G A A G C T A T G C G C T A A G T C T C A G G C A T A C T G T G C A G A T C A C G T

Hes1/MA1099.1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCACGGGACC
GGCACGCGTC-
 A C G T T C A G G T A C G T C A A T G C A C T G T A C G A C T G C G T A A G T C A G T C
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCACGGGACC
TCACGTGACC
 T C A G G T A C G T C A A T G C A C T G T A C G A C T G C G T A A G T C A G T C
A G C T A G T C G T C A A G T C C T A G A C G T A T C G T C G A A G T C A T G C

BHLHE40/MA0464.2/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCACGGGACC
ATCACGTGAC-
 A C G T T C A G G T A C G T C A A T G C A C T G T A C G A C T G C G T A A G T C A G T C
T G C A C A G T G T A C T G C A G A T C T C A G G A C T A C T G G T C A G A T C A C G T

Mitf/MA0620.1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCACGGGACC
NCACGTGACN
 T C A G G T A C G T C A A T G C A C T G T A C G A C T G C G T A A G T C A G T C
A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C

BHLHE41/MA0636.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCACGGGACC
GTCACGTGAC-
 A C G T T C A G G T A C G T C A A T G C A C T G T A C G A C T G C G T A A G T C A G T C
T C A G C A G T T A G C T C G A A G T C T C A G C G A T T A C G G T C A A G T C A C G T