Information for 3-YGATCAGGACCAGGGS (Motif 8)

A G C T T A C G G T C A A C G T A G T C G T C A A T C G C T A G C T G A G T A C A T G C C G T A C T A G A C T G A T C G A T G C
Reverse Opposite:
A T C G T A G C G T A C A G T C A C G T A T C G A C T G A G C T A G T C A T G C A C G T A C T G G T C A A C G T A G T C C T G A
p-value:1e-9
log p-value:-2.174e+01
Information Content per bp:1.766
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.5 +/- 23.8bp
Average Position of motif in Background47.2 +/- 12.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:YGATCAGGACCAGGGS--
--NNAGGGACAAGGGCNC
 A G C T T A C G G T C A A C G T A G T C G T C A A T C G C T A G C T G A G T A C A T G C C G T A C T A G A C T G A T C G A T G C A C G T A C G T
A C G T A C G T A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:YGATCAGGACCAGGGS
TGACANARRCCAGRC-
 A G C T T A C G G T C A A C G T A G T C G T C A A T C G C T A G C T G A G T A C A T G C C G T A C T A G A C T G A T C G A T G C
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:YGATCAGGACCAGGGS
---CCAGGAACAG---
 A G C T T A C G G T C A A C G T A G T C G T C A A T C G C T A G C T G A G T A C A T G C C G T A C T A G A C T G A T C G A T G C
A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:YGATCAGGACCAGGGS-------
---TCAGCACCATGGACAGCTCC
 A G C T T A C G G T C A A C G T A G T C G T C A A T C G C T A G C T G A G T A C A T G C C G T A C T A G A C T G A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

REST/MA0138.2/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:forward strand
Alignment:YGATCAGGACCAGGGS-------
--TTCAGCACCATGGACAGCGCC
 A G C T T A C G G T C A A C G T A G T C G T C A A T C G C T A G C T G A G T A C A T G C C G T A C T A G A C T G A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

Zfx/MA0146.2/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:YGATCAGGACCAGGGS--
----CAGGCCNNGGCCNN
 A G C T T A C G G T C A A C G T A G T C G T C A A T C G C T A G C T G A G T A C A T G C C G T A C T A G A C T G A T C G A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-YGATCAGGACCAGGGS
AAGTTCAAGGTCAGC--
 A C G T A G C T T A C G G T C A A C G T A G T C G T C A A T C G C T A G C T G A G T A C A T G C C G T A C T A G A C T G A T C G A T G C
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.49
Offset:0
Orientation:forward strand
Alignment:YGATCAGGACCAGGGS--
RGGTCADNNAGAGGTCAV
 A G C T T A C G G T C A A C G T A G T C G T C A A T C G C T A G C T G A G T A C A T G C C G T A C T A G A C T G A T C G A T G C A C G T A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:9
Score:0.49
Offset:5
Orientation:forward strand
Alignment:YGATCAGGACCAGGGS-
-----AGGTCAAGGTCA
 A G C T T A C G G T C A A C G T A G T C G T C A A T C G C T A G C T G A G T A C A T G C C G T A C T A G A C T G A T C G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.48
Offset:5
Orientation:forward strand
Alignment:YGATCAGGACCAGGGS-
-----AGGTCAAGGTCA
 A G C T T A C G G T C A A C G T A G T C G T C A A T C G C T A G C T G A G T A C A T G C C G T A C T A G A C T G A T C G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A