Information for 5-CCTCAGCARGGCACAG (Motif 8)

A G T C G T A C A C G T A T G C C G T A A C T G A T G C G T C A C T A G A C T G A C T G A G T C G T C A A G T C C T G A A C T G
Reverse Opposite:
A G T C G A C T A C T G A C G T A C T G G T A C A G T C A G T C A C G T A T C G A G T C A C G T A T C G G T C A A C T G C T A G
p-value:1e-11
log p-value:-2.644e+01
Information Content per bp:1.813
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.7 +/- 20.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCTCAGCARGGCACAG
-CACAGCAGGGGG---
 A G T C G T A C A C G T A T G C C G T A A C T G A T G C G T C A C T A G A C T G A C T G A G T C G T C A A G T C C T G A A C T G
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCTCAGCARGGCACAG
DCTCAGCAGG------
 A G T C G T A C A C G T A T G C C G T A A C T G A T G C G T C A C T A G A C T G A C T G A G T C G T C A A G T C C T G A A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCTCAGCARGGCACAG
DCHCAGCAGGRGGCC-
 A G T C G T A C A C G T A T G C C G T A A C T G A T G C G T C A C T A G A C T G A C T G A G T C G T C A A G T C C T G A A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCTCAGCARGGCACAG
CCACACAGCAGGAGA---
 A C G T A C G T A G T C G T A C A C G T A T G C C G T A A C T G A T G C G T C A C T A G A C T G A C T G A G T C G T C A A G T C C T G A A C T G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCTCAGCARGGCACAG
CCACACAGCAGGAGA---
 A C G T A C G T A G T C G T A C A C G T A T G C C G T A A C T G A T G C G T C A C T A G A C T G A C T G A G T C G T C A A G T C C T G A A C T G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCTCAGCARGGCACAG
GAGCACAGCAGGACA---
 A C G T A C G T A G T C G T A C A C G T A T G C C G T A A C T G A T G C G T C A C T A G A C T G A C T G A G T C G T C A A G T C C T G A A C T G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CCTCAGCARGGCACAG
------CCAGGAACAG
 A G T C G T A C A C G T A T G C C G T A A C T G A T G C G T C A C T A G A C T G A C T G A G T C G T C A A G T C C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:CCTCAGCARGGCACAG
-----NGTGGGCAT--
 A G T C G T A C A C G T A T G C C G T A A C T G A T G C G T C A C T A G A C T G A C T G A G T C G T C A A G T C C T G A A C T G
A C G T A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CCTCAGCARGGCACAG
TGAGTCAGCA--------
 A C G T A C G T A G T C G T A C A C G T A T G C C G T A A C T G A T G C G T C A C T A G A C T G A C T G A G T C G T C A A G T C C T G A A C T G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CCTCAGCARGGCACAG
-GTCAGCANNTN----
 A G T C G T A C A C G T A T G C C G T A A C T G A T G C G T C A C T A G A C T G A C T G A G T C G T C A A G T C C T G A A C T G
A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T