Information for 3-CCWGSCTGCCAGCCCT (Motif 6)

A G T C G T A C C G A T A C T G A T C G A G T C C G A T A T C G T A G C A G T C C G T A A C T G A T G C A T G C G T A C C A G T
Reverse Opposite:
G T C A C A T G A T C G A T C G A G T C C G A T A C T G A T C G A T G C C G T A A C T G A T G C A G T C C G T A A C T G A C T G
p-value:1e-11
log p-value:-2.647e+01
Information Content per bp:1.790
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.76%
Number of Background Sequences with motif35.2
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets54.8 +/- 22.9bp
Average Position of motif in Background41.2 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CCWGSCTGCCAGCCCT
-CTGGCAGNCTGCCA-
 A G T C G T A C C G A T A C T G A T C G A G T C C G A T A T C G T A G C A G T C C G T A A C T G A T G C A T G C G T A C C A G T
A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCWGSCTGCCAGCCCT
GTCATGCHTGRCTGS---
 A C G T A C G T A G T C G T A C C G A T A C T G A T C G A G T C C G A T A T C G T A G C A G T C C G T A A C T G A T G C A T G C G T A C C A G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCWGSCTGCCAGCCCT
-CTGTCTGTCACCT--
 A G T C G T A C C G A T A C T G A T C G A G T C C G A T A T C G T A G C A G T C C G T A A C T G A T G C A T G C G T A C C A G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCWGSCTGCCAGCCCT
CTTGGCANNNTGCCAA
 A G T C G T A C C G A T A C T G A T C G A G T C C G A T A T C G T A G C A G T C C G T A A C T G A T G C A T G C G T A C C A G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCWGSCTGCCAGCCCT
---VGCTGWCAVB---
 A G T C G T A C C G A T A C T G A T C G A G T C C G A T A T C G T A G C A G T C C G T A A C T G A T G C A T G C G T A C C A G T
A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCWGSCTGCCAGCCCT
--TGAGTGACAGSC--
 A G T C G T A C C G A T A C T G A T C G A G T C C G A T A T C G T A G C A G T C C G T A A C T G A T G C A T G C G T A C C A G T
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCWGSCTGCCAGCCCT
--TGTCTGDCACCT--
 A G T C G T A C C G A T A C T G A T C G A G T C C G A T A T C G T A G C A G T C C G T A A C T G A T G C A T G C G T A C C A G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCWGSCTGCCAGCCCT
NGTCACGCTTGGCTGC---
 A C G T A C G T A C G T A G T C G T A C C G A T A C T G A T C G A G T C C G A T A T C G T A G C A G T C C G T A A C T G A T G C A T G C G T A C C A G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CCWGSCTGCCAGCCCT
----CTTGGCAA----
 A G T C G T A C C G A T A C T G A T C G A G T C C G A T A T C G T A G C A G T C C G T A A C T G A T G C A T G C G T A C C A G T
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCWGSCTGCCAGCCCT
-BTGABTGACAGS---
 A G T C G T A C C G A T A C T G A T C G A G T C C G A T A T C G T A G C A G T C C G T A A C T G A T G C A T G C G T A C C A G T
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T