Information for 15-ACTAGKTWGC (Motif 42)

C G T A A G T C A C G T C G T A A C T G A C G T A C G T C G A T C T A G A G T C
Reverse Opposite:
A C T G A G T C C G T A C G T A G T C A A G T C A C G T C G T A A C T G A C G T
p-value:1e-4
log p-value:-1.150e+01
Information Content per bp:1.904
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.2 +/- 32.3bp
Average Position of motif in Background53.7 +/- 10.7bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----ACTAGKTWGC---
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T C G A T C T A G A G T C A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ACTAGKTWGC
ACTAGTTAAC
 C G T A A G T C A C G T C G T A A C T G A C G T A C G T C G A T C T A G A G T C
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ACTAGKTWGC----
ANNNCTAGTTAACNGNN
 A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T C G A T C T A G A G T C A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

PH0092.1_Lhx2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACTAGKTWGC----
TAAACTAATTAGTGAAC
 A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T C G A T C T A G A G T C A C G T A C G T A C G T A C G T
C G A T T G C A G T C A T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A T G G T C A G T C A A T G C

PH0034.1_Gbx2/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACTAGKTWGC----
AGCGCTAATTAGCGATT
 A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T C G A T C T A G A G T C A C G T A C G T A C G T A C G T
C G T A T A C G T G A C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C T A C G C T G A A C G T C A G T

PH0098.1_Lhx8/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACTAGKTWGC----
ACCCCTAATTAGCGGTG
 A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T C G A T C T A G A G T C A C G T A C G T A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

PH0155.1_Prrx2/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----ACTAGKTWGC---
NTTCGCTAATTAGCTNT
 A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T C G A T C T A G A G T C A C G T A C G T A C G T
G A C T G C A T G A C T G T A C T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A G T A C G T G C A T

PH0032.1_Evx2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ACTAGKTWGC----
ANCGCTAATTAGCGGTN
 A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T C G A T C T A G A G T C A C G T A C G T A C G T A C G T
C G T A T G A C T G A C T A C G T A G C A G C T T G C A C G T A A C G T A C G T C T G A T A C G A G T C C A T G C T A G A C G T T C A G

PH0097.1_Lhx6_2/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ACTAGKTWGC----
TCCACTAATTAGCGGTT
 A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T C G A T C T A G A G T C A C G T A C G T A C G T A C G T
G C A T T G A C G A T C T C G A G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G T C C A T G C T A G C G A T A C G T

PH0131.1_Pax4/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---ACTAGKTWGC----
TGAACTAATTAGCCCAC
 A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A C G T A C G T C G A T C T A G A G T C A C G T A C G T A C G T A C G T
G C A T T A C G T C G A C G T A A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G A T C A G T C T A G C C T G A G T A C