Information for 3-RGCABCCTTG (Motif 13)

T C A G A C T G T A G C G T C A A C T G A G T C G T A C C G A T G A C T A C T G
Reverse Opposite:
T G A C C T G A G C T A C A T G T C A G T G A C C A G T A T C G T G A C A G T C
p-value:1e-10
log p-value:-2.310e+01
Information Content per bp:1.546
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.19%
Number of Background Sequences with motif231.1
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets46.0 +/- 24.4bp
Average Position of motif in Background48.3 +/- 34.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:1
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-RGCABCCTTG-
AGGVNCCTTTGT
 A C G T T C A G A C T G T A G C G T C A A C T G A G T C G T A C C G A T G A C T A C T G A C G T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---RGCABCCTTG--
SCAGYCADGCATGAC
 A C G T A C G T A C G T T C A G A C T G T A G C G T C A A C T G A G T C G T A C C G A T G A C T A C T G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.53
Offset:5
Orientation:forward strand
Alignment:RGCABCCTTG-
-----CTTTGT
 T C A G A C T G T A G C G T C A A C T G A G T C G T A C C G A T G A C T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:RGCABCCTTG---
-GCCGCCATCTTG
 T C A G A C T G T A G C G T C A A C T G A G T C G T A C C G A T G A C T A C T G A C G T A C G T A C G T
A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:RGCABCCTTG---
-GCNGCCATCTTG
 T C A G A C T G T A G C G T C A A C T G A G T C G T A C C G A T G A C T A C T G A C G T A C G T A C G T
A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

POL002.1_INR/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:RGCABCCTTG
-TCAGTCTT-
 T C A G A C T G T A G C G T C A A C T G A G T C G T A C C G A T G A C T A C T G
A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.52
Offset:4
Orientation:forward strand
Alignment:RGCABCCTTG----
----CCWTTGTYYB
 T C A G A C T G T A G C G T C A A C T G A G T C G T A C C G A T G A C T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Pax2/MA0067.1/Jaspar

Match Rank:8
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:RGCABCCTTG---
-----NCGTGACN
 T C A G A C T G T A G C G T C A A C T G A G T C G T A C C G A T G A C T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

Znf423/MA0116.1/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:RGCABCCTTG------
-GCACCCCTGGGTGCC
 T C A G A C T G T A G C G T C A A C T G A G T C G T A C C G A T G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C T G T G A C G T C A G T A C A G T C A G T C G A T C C G A T C T A G A C T G A C T G A C G T A C T G A T G C A G T C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:RGCABCCTTG
----TGCGTG
 T C A G A C T G T A G C G T C A A C T G A G T C G T A C C G A T G A C T A C T G
A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G