Information for 8-TGRAKCAGCCAGCAAC (Motif 11)

C A G T A C T G C T A G C G T A A C T G A G T C C G T A A C T G G T A C A G T C G T C A A C T G A G T C C G T A T C G A G T A C
Reverse Opposite:
A C T G A C G T A C G T A C T G G T A C A C G T A C T G A C T G G T A C C G A T A C T G T G A C C G A T G A T C A G T C G C T A
p-value:1e-11
log p-value:-2.644e+01
Information Content per bp:1.755
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.4 +/- 22.3bp
Average Position of motif in Background61.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TGRAKCAGCCAGCAAC-----
----TCACCCATCAATAAACA
 C A G T A C T G C T A G C G T A A C T G A G T C C G T A A C T G G T A C A G T C G T C A A C T G A G T C C G T A T C G A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TGRAKCAGCCAGCAAC
-----CTGCCCGCA--
 C A G T A C T G C T A G C G T A A C T G A G T C C G T A A C T G G T A C A G T C G T C A A C T G A G T C C G T A T C G A G T A C
A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.56
Offset:6
Orientation:forward strand
Alignment:TGRAKCAGCCAGCAAC
------GGCCATTAAC
 C A G T A C T G C T A G C G T A A C T G A G T C C G T A A C T G G T A C A G T C G T C A A C T G A G T C C G T A T C G A G T A C
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TGRAKCAGCCAGCAAC
----TGAGTCAGCA--
 C A G T A C T G C T A G C G T A A C T G A G T C C G T A A C T G G T A C A G T C G T C A A C T G A G T C C G T A T C G A G T A C
A C G T A C G T A C G T A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TGRAKCAGCCAGCAAC
----SCTGTCARCACC
 C A G T A C T G C T A G C G T A A C T G A G T C C G T A A C T G G T A C A G T C G T C A A C T G A G T C C G T A T C G A G T A C
A C G T A C G T A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TGRAKCAGCCAGCAAC
----BCAGACWA----
 C A G T A C T G C T A G C G T A A C T G A G T C C G T A A C T G G T A C A G T C G T C A A C T G A G T C C G T A T C G A G T A C
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TGRAKCAGCCAGCAAC
---GYCATCMATCAT-
 C A G T A C T G C T A G C G T A A C T G A G T C C G T A A C T G G T A C A G T C G T C A A C T G A G T C C G T A T C G A G T A C
A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGRAKCAGCCAGCAAC
CAAATCCAGACATCACA
 A C G T C A G T A C T G C T A G C G T A A C T G A G T C C G T A A C T G G T A C A G T C G T C A A C T G A G T C C G T A T C G A G T A C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TGRAKCAGCCAGCAAC
-GGACCACCCACG---
 C A G T A C T G C T A G C G T A A C T G A G T C C G T A A C T G G T A C A G T C G T C A A C T G A G T C C G T A T C G A G T A C
A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:TGRAKCAGCCAGCAAC
----CCAGACAG----
 C A G T A C T G C T A G C G T A A C T G A G T C C G T A A C T G G T A C A G T C G T C A A C T G A G T C C G T A T C G A G T A C
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T