Information for 7-CCATTYAGAGGACWYM (Motif 10)

A G T C A G T C G T C A A C G T A G C T A G T C C G T A A C T G C G T A C T A G A C T G C G T A A G T C C G A T A G C T T G A C
Reverse Opposite:
A C T G C T G A C G T A A C T G A C G T A G T C A G T C A C G T A G T C A C G T C T A G C T G A G T C A A C G T A C T G A C T G
p-value:1e-11
log p-value:-2.644e+01
Information Content per bp:1.876
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.6 +/- 17.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYA/MA0060.2/Jaspar

Match Rank:1
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CCATTYAGAGGACWYM
TGGACCAATCAGCACTCT--
 A C G T A C G T A C G T A C G T A G T C A G T C G T C A A C G T A G C T A G T C C G T A A C T G C G T A C T A G A C T G C G T A A G T C C G A T A G C T T G A C
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCATTYAGAGGACWYM
CCTTTTATAGNC----
 A G T C A G T C G T C A A C G T A G C T A G T C C G T A A C T G C G T A C T A G A C T G C G T A A G T C C G A T A G C T T G A C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T A C G T A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:3
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CCATTYAGAGGACWYM----
---TTCNAAGTACTTNNNNN
 A G T C A G T C G T C A A C G T A G C T A G T C C G T A A C T G C G T A C T A G A C T G C G T A A G T C C G A T A G C T T G A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.53
Offset:-7
Orientation:forward strand
Alignment:-------CCATTYAGAGGACWYM
AAATGGACCAATCAG--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T C A A C G T A G C T A G T C C G T A A C T G C G T A C T A G A C T G C G T A A G T C C G A T A G C T T G A C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CCATTYAGAGGACWYM
GACCACATTCATACAAT---
 A C G T A C G T A C G T A C G T A G T C A G T C G T C A A C G T A G C T A G T C C G T A A C T G C G T A C T A G A C T G C G T A A G T C C G A T A G C T T G A C
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T A C G T A C G T A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:6
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CCATTYAGAGGACWYM----
---TTTTAAGTACTTAAATT
 A G T C A G T C G T C A A C G T A G C T A G T C C G T A A C T G C G T A C T A G A C T G C G T A A G T C C G A T A G C T T G A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CCATTYAGAGGACWYM
GGCCATTAAC--------
 A C G T A C G T A G T C A G T C G T C A A C G T A G C T A G T C C G T A A C T G C G T A C T A G A C T G C G T A A G T C C G A T A G C T T G A C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.50
Offset:6
Orientation:forward strand
Alignment:CCATTYAGAGGACWYM
------TRAGGTCA--
 A G T C A G T C G T C A A C G T A G C T A G T C C G T A A C T G C G T A C T A G A C T G C G T A A G T C C G A T A G C T T G A C
A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

SPIB/MA0081.1/Jaspar

Match Rank:9
Score:0.50
Offset:6
Orientation:forward strand
Alignment:CCATTYAGAGGACWYM
------AGAGGAA---
 A G T C A G T C G T C A A C G T A G C T A G T C C G T A A C T G C G T A C T A G A C T G C G T A A G T C C G A T A G C T T G A C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CCATTYAGAGGACWYM
ACATTCATGACACG--
 A G T C A G T C G T C A A C G T A G C T A G T C C G T A A C T G C G T A C T A G A C T G C G T A A G T C C G A T A G C T T G A C
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G A C G T A C G T