Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 688)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48071)	% of Background Sequences with Motif
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-2	-5.882e+00	1.0000	88.0	12.79%	4566.7	9.50%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-2	-4.688e+00	1.0000	10.0	1.45%	286.7	0.60%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-1	-4.554e+00	1.0000	27.0	3.92%	1159.1	2.41%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-4.166e+00	1.0000	3.0	0.44%	36.4	0.08%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-3.994e+00	1.0000	67.0	9.74%	3608.4	7.50%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.892e+00	1.0000	6.0	0.87%	147.7	0.31%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-3.248e+00	1.0000	16.0	2.33%	680.4	1.41%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-1	-3.170e+00	1.0000	1.0	0.15%	3.2	0.01%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-3.127e+00	1.0000	58.0	8.43%	3218.3	6.69%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-2.828e+00	1.0000	133.0	19.33%	8174.8	17.00%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.812e+00	1.0000	21.0	3.05%	1010.1	2.10%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-2.806e+00	1.0000	4.0	0.58%	102.3	0.21%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-2.796e+00	1.0000	14.0	2.03%	612.8	1.27%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-2.725e+00	1.0000	2.0	0.29%	29.7	0.06%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-2.614e+00	1.0000	10.0	1.45%	409.8	0.85%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-1	-2.601e+00	1.0000	6.0	0.87%	203.3	0.42%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-2.519e+00	1.0000	5.0	0.73%	159.5	0.33%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-2.465e+00	1.0000	110.0	15.99%	6771.5	14.08%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-2.443e+00	1.0000	29.0	4.22%	1544.9	3.21%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-1	-2.395e+00	1.0000	15.0	2.18%	711.3	1.48%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.370e+00	1.0000	21.0	3.05%	1069.2	2.22%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-2.356e+00	1.0000	103.0	14.97%	6344.4	13.19%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-2.356e+00	1.0000	189.0	27.47%	12126.8	25.22%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.335e+00	1.0000	86.0	12.50%	5228.7	10.87%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.290e+00	1.0000	62.0	9.01%	3672.9	7.64%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.250e+00	1.0000	37.0	5.38%	2080.0	4.33%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.247e+00	1.0000	21.0	3.05%	1087.7	2.26%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.234e+00	1.0000	5.0	0.73%	174.6	0.36%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.217e+00	1.0000	5.0	0.73%	175.1	0.36%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.206e+00	1.0000	33.0	4.80%	1836.8	3.82%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.175e+00	1.0000	46.0	6.69%	2669.5	5.55%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.147e+00	1.0000	110.0	15.99%	6885.9	14.32%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.111e+00	1.0000	39.0	5.67%	2236.5	4.65%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.103e+00	1.0000	66.0	9.59%	3986.4	8.29%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.102e+00	1.0000	43.0	6.25%	2494.7	5.19%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.094e+00	1.0000	11.0	1.60%	513.4	1.07%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-2.083e+00	1.0000	17.0	2.47%	869.0	1.81%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.083e+00	1.0000	7.0	1.02%	289.1	0.60%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.020e+00	1.0000	183.0	26.60%	11873.5	24.69%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.916e+00	1.0000	21.0	3.05%	1140.9	2.37%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.898e+00	1.0000	9.0	1.31%	418.6	0.87%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.884e+00	1.0000	135.0	19.62%	8675.9	18.04%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.862e+00	1.0000	19.0	2.76%	1025.4	2.13%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.859e+00	1.0000	9.0	1.31%	422.2	0.88%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.856e+00	1.0000	4.0	0.58%	145.1	0.30%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.844e+00	1.0000	6.0	0.87%	253.5	0.53%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.838e+00	1.0000	22.0	3.20%	1216.5	2.53%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.783e+00	1.0000	6.0	0.87%	258.8	0.54%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.762e+00	1.0000	40.0	5.81%	2385.9	4.96%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.756e+00	1.0000	4.0	0.58%	151.1	0.31%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.723e+00	1.0000	101.0	14.68%	6450.3	13.41%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.705e+00	1.0000	39.0	5.67%	2335.0	4.86%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.703e+00	1.0000	13.0	1.89%	680.9	1.42%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.698e+00	1.0000	26.0	3.78%	1498.0	3.12%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.636e+00	1.0000	42.0	6.10%	2550.5	5.30%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.635e+00	1.0000	5.0	0.73%	214.3	0.45%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.626e+00	1.0000	2.0	0.29%	57.5	0.12%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.570e+00	1.0000	23.0	3.34%	1332.1	2.77%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.568e+00	1.0000	19.0	2.76%	1077.5	2.24%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.544e+00	1.0000	3.0	0.44%	111.1	0.23%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.516e+00	1.0000	20.0	2.91%	1151.5	2.39%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.506e+00	1.0000	20.0	2.91%	1153.6	2.40%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.496e+00	1.0000	80.0	11.63%	5131.8	10.67%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.482e+00	1.0000	18.0	2.62%	1030.3	2.14%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.479e+00	1.0000	4.0	0.58%	170.5	0.35%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-1.438e+00	1.0000	37.0	5.38%	2278.8	4.74%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.430e+00	1.0000	68.0	9.88%	4350.9	9.05%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.376e+00	1.0000	13.0	1.89%	731.1	1.52%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.376e+00	1.0000	13.0	1.89%	731.7	1.52%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.354e+00	1.0000	36.0	5.23%	2238.0	4.65%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.347e+00	1.0000	13.0	1.89%	736.8	1.53%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.342e+00	1.0000	11.0	1.60%	610.4	1.27%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.333e+00	1.0000	67.0	9.74%	4322.4	8.99%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.330e+00	1.0000	15.0	2.18%	867.5	1.80%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.322e+00	1.0000	6.0	0.87%	302.8	0.63%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.311e+00	1.0000	79.0	11.48%	5145.0	10.70%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.309e+00	1.0000	1.0	0.15%	22.2	0.05%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.297e+00	1.0000	24.0	3.49%	1460.4	3.04%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.292e+00	1.0000	11.0	1.60%	618.5	1.29%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.252e+00	1.0000	13.0	1.89%	753.4	1.57%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.236e+00	1.0000	6.0	0.87%	312.7	0.65%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.235e+00	1.0000	1.0	0.15%	24.4	0.05%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.234e+00	1.0000	2.0	0.29%	75.8	0.16%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.186e+00	1.0000	5.0	0.73%	256.1	0.53%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.178e+00	1.0000	9.0	1.31%	509.5	1.06%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.168e+00	1.0000	47.0	6.83%	3038.1	6.32%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.153e+00	1.0000	75.0	10.90%	4947.3	10.29%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.152e+00	1.0000	36.0	5.23%	2302.7	4.79%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.144e+00	1.0000	10.0	1.45%	579.8	1.21%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.140e+00	1.0000	20.0	2.91%	1236.9	2.57%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.136e+00	1.0000	20.0	2.91%	1237.4	2.57%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.122e+00	1.0000	21.0	3.05%	1307.5	2.72%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.116e+00	1.0000	2.0	0.29%	83.0	0.17%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.109e+00	1.0000	18.0	2.62%	1111.4	2.31%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.108e+00	1.0000	1.0	0.15%	29.0	0.06%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.089e+00	1.0000	14.0	2.03%	851.1	1.77%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.081e+00	1.0000	43.0	6.25%	2801.7	5.83%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.080e+00	1.0000	25.0	3.63%	1586.7	3.30%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.067e+00	1.0000	14.0	2.03%	856.6	1.78%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.054e+00	1.0000	10.0	1.45%	595.6	1.24%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.040e+00	1.0000	2.0	0.29%	87.3	0.18%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.038e+00	1.0000	13.0	1.89%	796.7	1.66%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.030e+00	1.0000	33.0	4.80%	2142.9	4.46%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.014e+00	1.0000	3.0	0.44%	150.6	0.31%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.001e+00	1.0000	1.0	0.15%	32.0	0.07%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-9.945e-01	1.0000	33.0	4.80%	2155.5	4.48%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-9.858e-01	1.0000	73.0	10.61%	4896.5	10.18%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-9.703e-01	1.0000	20.0	2.91%	1282.1	2.67%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-9.692e-01	1.0000	8.0	1.16%	479.5	1.00%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-9.486e-01	1.0000	36.0	5.23%	2378.0	4.95%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-9.438e-01	1.0000	2.0	0.29%	94.8	0.20%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-9.238e-01	1.0000	36.0	5.23%	2387.9	4.97%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-9.234e-01	1.0000	9.0	1.31%	554.7	1.15%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-8.984e-01	1.0000	8.0	1.16%	492.6	1.02%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-8.933e-01	1.0000	18.0	2.62%	1170.0	2.43%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-8.867e-01	1.0000	250.0	36.34%	17245.2	35.86%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-8.777e-01	1.0000	20.0	2.91%	1310.7	2.73%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-8.727e-01	1.0000	4.0	0.58%	230.1	0.48%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-8.675e-01	1.0000	28.0	4.07%	1861.7	3.87%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-8.491e-01	1.0000	1.0	0.15%	39.9	0.08%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-8.358e-01	1.0000	2.0	0.29%	103.6	0.22%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-8.343e-01	1.0000	59.0	8.58%	4014.8	8.35%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-8.339e-01	1.0000	37.0	5.38%	2494.7	5.19%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-8.303e-01	1.0000	1.0	0.15%	40.6	0.08%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-8.243e-01	1.0000	68.0	9.88%	4643.6	9.66%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-8.082e-01	1.0000	6.0	0.87%	374.3	0.78%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-8.060e-01	1.0000	56.0	8.14%	3823.0	7.95%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-8.038e-01	1.0000	21.0	3.05%	1403.4	2.92%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.976e-01	1.0000	5.0	0.73%	308.5	0.64%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-7.947e-01	1.0000	42.0	6.10%	2859.0	5.95%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-7.774e-01	1.0000	7.0	1.02%	448.9	0.93%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-7.757e-01	1.0000	96.0	13.95%	6620.0	13.77%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-7.717e-01	1.0000	55.0	7.99%	3772.5	7.85%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-7.694e-01	1.0000	9.0	1.31%	587.6	1.22%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-7.607e-01	1.0000	1.0	0.15%	44.0	0.09%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-7.504e-01	1.0000	31.0	4.51%	2116.2	4.40%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-7.361e-01	1.0000	18.0	2.62%	1219.9	2.54%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-7.283e-01	1.0000	6.0	0.87%	389.7	0.81%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-7.232e-01	1.0000	6.0	0.87%	390.1	0.81%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-7.154e-01	1.0000	7.0	1.02%	461.3	0.96%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-7.083e-01	1.0000	11.0	1.60%	741.5	1.54%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-6.947e-01	1.0000	41.0	5.96%	2840.3	5.91%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-6.926e-01	1.0000	35.0	5.09%	2422.4	5.04%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-6.843e-01	1.0000	4.0	0.58%	258.0	0.54%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-6.835e-01	1.0000	11.0	1.60%	748.4	1.56%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.800e-01	1.0000	10.0	1.45%	679.7	1.41%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.797e-01	1.0000	8.0	1.16%	539.6	1.12%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-6.768e-01	1.0000	12.0	1.74%	820.6	1.71%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.736e-01	1.0000	5.0	0.73%	330.9	0.69%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-6.532e-01	1.0000	22.0	3.20%	1530.9	3.18%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-6.527e-01	1.0000	155.0	22.53%	10844.7	22.55%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-6.441e-01	1.0000	3.0	0.44%	194.5	0.40%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-6.288e-01	1.0000	41.0	5.96%	2877.4	5.98%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-6.114e-01	1.0000	2.0	0.29%	127.3	0.26%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.070e-01	1.0000	1.0	0.15%	55.3	0.11%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.952e-01	1.0000	1.0	0.15%	56.7	0.12%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.889e-01	1.0000	23.0	3.34%	1629.7	3.39%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-5.738e-01	1.0000	2.0	0.29%	132.9	0.28%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-5.644e-01	1.0000	11.0	1.60%	785.1	1.63%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-5.565e-01	1.0000	17.0	2.47%	1217.6	2.53%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-5.476e-01	1.0000	20.0	2.91%	1435.1	2.98%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.436e-01	1.0000	18.0	2.62%	1294.2	2.69%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-5.327e-01	1.0000	20.0	2.91%	1442.9	3.00%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-5.182e-01	1.0000	68.0	9.88%	4860.5	10.11%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-5.138e-01	1.0000	95.0	13.81%	6771.7	14.08%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-5.128e-01	1.0000	9.0	1.31%	658.9	1.37%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.089e-01	1.0000	4.0	0.58%	292.9	0.61%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.049e-01	1.0000	87.0	12.65%	6215.0	12.93%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.014e-01	1.0000	1.0	0.15%	65.1	0.14%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-5.000e-01	1.0000	49.0	7.12%	3528.3	7.34%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-4.949e-01	1.0000	3.0	0.44%	220.6	0.46%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-4.921e-01	1.0000	1.0	0.15%	66.7	0.14%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.914e-01	1.0000	17.0	2.47%	1246.1	2.59%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.857e-01	1.0000	15.0	2.18%	1104.8	2.30%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-4.784e-01	1.0000	112.0	16.28%	8008.7	16.66%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-4.738e-01	1.0000	7.0	1.02%	524.7	1.09%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-4.686e-01	1.0000	14.0	2.03%	1039.3	2.16%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-4.637e-01	1.0000	2.0	0.29%	149.9	0.31%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-4.579e-01	1.0000	44.0	6.40%	3204.9	6.67%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-4.383e-01	1.0000	3.0	0.44%	232.8	0.48%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.354e-01	1.0000	5.0	0.73%	386.1	0.80%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-4.290e-01	1.0000	26.0	3.78%	1931.4	4.02%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-4.273e-01	1.0000	67.0	9.74%	4872.2	10.13%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-4.238e-01	1.0000	73.0	10.61%	5303.2	11.03%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.208e-01	1.0000	42.0	6.10%	3090.0	6.43%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.147e-01	1.0000	8.0	1.16%	619.6	1.29%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-4.043e-01	1.0000	3.0	0.44%	240.2	0.50%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-3.928e-01	1.0000	5.0	0.73%	399.7	0.83%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-3.927e-01	1.0000	20.0	2.91%	1517.4	3.16%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.910e-01	1.0000	4.0	0.58%	322.6	0.67%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-3.902e-01	1.0000	23.0	3.34%	1738.7	3.62%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.883e-01	1.0000	3.0	0.44%	244.5	0.51%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.714e-01	1.0000	2.0	0.29%	167.2	0.35%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.714e-01	1.0000	2.0	0.29%	167.6	0.35%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.697e-01	1.0000	1.0	0.15%	82.1	0.17%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.697e-01	1.0000	1.0	0.15%	82.2	0.17%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-3.693e-01	1.0000	19.0	2.76%	1458.2	3.03%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-3.691e-01	1.0000	7.0	1.02%	561.6	1.17%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-3.650e-01	1.0000	8.0	1.16%	639.8	1.33%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-3.647e-01	1.0000	16.0	2.33%	1239.8	2.58%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.641e-01	1.0000	20.0	2.91%	1535.4	3.19%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-3.633e-01	1.0000	1.0	0.15%	83.5	0.17%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.633e-01	1.0000	1.0	0.15%	83.6	0.17%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.591e-01	1.0000	7.0	1.02%	566.0	1.18%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-3.537e-01	1.0000	122.0	17.73%	8874.2	18.46%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-3.474e-01	1.0000	10.0	1.45%	799.4	1.66%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-3.419e-01	1.0000	12.0	1.74%	953.6	1.98%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-3.410e-01	1.0000	6.0	0.87%	495.9	1.03%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-3.392e-01	1.0000	1.0	0.15%	87.6	0.18%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-3.375e-01	1.0000	5.0	0.73%	418.2	0.87%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-3.364e-01	1.0000	4.0	0.58%	339.5	0.71%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.349e-01	1.0000	42.0	6.10%	3167.0	6.59%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-3.335e-01	1.0000	1.0	0.15%	88.5	0.18%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-3.311e-01	1.0000	6.0	0.87%	499.9	1.04%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-3.262e-01	1.0000	7.0	1.02%	579.2	1.20%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.254e-01	1.0000	64.0	9.30%	4767.3	9.91%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.239e-01	1.0000	7.0	1.02%	580.6	1.21%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.204e-01	1.0000	12.0	1.74%	965.5	2.01%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.186e-01	1.0000	89.0	12.94%	6571.8	13.67%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.170e-01	1.0000	1.0	0.15%	91.8	0.19%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.130e-01	1.0000	2.0	0.29%	181.4	0.38%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.078e-01	1.0000	22.0	3.20%	1723.8	3.58%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.076e-01	1.0000	3.0	0.44%	267.6	0.56%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.964e-01	1.0000	1.0	0.15%	95.3	0.20%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.919e-01	1.0000	86.0	12.50%	6394.1	13.30%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.895e-01	1.0000	3.0	0.44%	273.2	0.57%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.853e-01	1.0000	17.0	2.47%	1366.9	2.84%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-2.815e-01	1.0000	25.0	3.63%	1968.9	4.09%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.810e-01	1.0000	11.0	1.60%	912.7	1.90%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-2.789e-01	1.0000	36.0	5.23%	2784.7	5.79%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.765e-01	1.0000	15.0	2.18%	1221.2	2.54%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.668e-01	1.0000	136.0	19.77%	10013.4	20.82%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.659e-01	1.0000	19.0	2.76%	1532.5	3.19%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.655e-01	1.0000	21.0	3.05%	1683.7	3.50%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.650e-01	1.0000	25.0	3.63%	1983.5	4.13%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.647e-01	1.0000	5.0	0.73%	448.9	0.93%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.642e-01	1.0000	2.0	0.29%	195.9	0.41%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.597e-01	1.0000	1.0	0.15%	103.0	0.21%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.511e-01	1.0000	3.0	0.44%	288.0	0.60%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.485e-01	1.0000	3.0	0.44%	288.9	0.60%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.479e-01	1.0000	9.0	1.31%	777.3	1.62%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.471e-01	1.0000	6.0	0.87%	538.8	1.12%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.444e-01	1.0000	8.0	1.16%	700.6	1.46%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-2.402e-01	1.0000	88.0	12.79%	6620.9	13.77%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.398e-01	1.0000	14.0	2.03%	1172.6	2.44%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.393e-01	1.0000	19.0	2.76%	1555.9	3.24%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.379e-01	1.0000	51.0	7.41%	3935.5	8.18%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.244e-01	1.0000	3.0	0.44%	298.4	0.62%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-2.244e-01	1.0000	38.0	5.52%	2995.6	6.23%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.182e-01	1.0000	7.0	1.02%	636.6	1.32%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.155e-01	1.0000	17.0	2.47%	1424.2	2.96%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.154e-01	1.0000	3.0	0.44%	302.3	0.63%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.108e-01	1.0000	4.0	0.58%	391.9	0.82%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-2.089e-01	1.0000	4.0	0.58%	392.8	0.82%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.078e-01	1.0000	59.0	8.58%	4567.9	9.50%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.070e-01	1.0000	4.0	0.58%	393.8	0.82%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.059e-01	1.0000	7.0	1.02%	644.3	1.34%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.052e-01	1.0000	34.0	4.94%	2722.3	5.66%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.045e-01	1.0000	58.0	8.43%	4499.5	9.36%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.041e-01	1.0000	26.0	3.78%	2122.9	4.42%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.039e-01	1.0000	1.0	0.15%	118.5	0.25%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-2.007e-01	1.0000	1.0	0.15%	119.6	0.25%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.965e-01	1.0000	3.0	0.44%	311.8	0.65%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.901e-01	1.0000	9.0	1.31%	818.7	1.70%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.866e-01	1.0000	3.0	0.44%	316.8	0.66%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.835e-01	1.0000	8.0	1.16%	742.0	1.54%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.828e-01	1.0000	3.0	0.44%	318.1	0.66%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.805e-01	1.0000	60.0	8.72%	4688.5	9.75%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.773e-01	1.0000	3.0	0.44%	321.5	0.67%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.708e-01	1.0000	4.0	0.58%	414.4	0.86%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.666e-01	1.0000	7.0	1.02%	673.5	1.40%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.643e-01	1.0000	9.0	1.31%	840.8	1.75%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.621e-01	1.0000	5.0	0.73%	508.0	1.06%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.617e-01	1.0000	51.0	7.41%	4058.1	8.44%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.594e-01	1.0000	5.0	0.73%	509.7	1.06%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.585e-01	1.0000	1.0	0.15%	134.0	0.28%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.510e-01	1.0000	41.0	5.96%	3331.2	6.93%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.489e-01	1.0000	5.0	0.73%	517.3	1.08%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.473e-01	1.0000	4.0	0.58%	430.5	0.90%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.445e-01	1.0000	58.0	8.43%	4613.2	9.59%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.395e-01	1.0000	2.0	0.29%	248.8	0.52%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.290e-01	1.0000	32.0	4.65%	2690.4	5.60%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.246e-01	1.0000	16.0	2.33%	1451.1	3.02%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.222e-01	1.0000	4.0	0.58%	450.7	0.94%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.194e-01	1.0000	37.0	5.38%	3091.5	6.43%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.184e-01	1.0000	1.0	0.15%	153.3	0.32%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.179e-01	1.0000	11.0	1.60%	1055.4	2.19%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.083e-01	1.0000	2.0	0.29%	269.3	0.56%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.073e-01	1.0000	5.0	0.73%	555.0	1.15%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.040e-01	1.0000	23.0	3.34%	2041.1	4.24%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.032e-01	1.0000	1.0	0.15%	162.1	0.34%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.017e-01	1.0000	1.0	0.15%	163.8	0.34%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-9.867e-02	1.0000	1.0	0.15%	165.4	0.34%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-9.848e-02	1.0000	8.0	1.16%	829.4	1.72%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-9.694e-02	1.0000	21.0	3.05%	1897.2	3.95%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-9.694e-02	1.0000	3.0	0.44%	379.8	0.79%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-9.282e-02	1.0000	7.0	1.02%	750.1	1.56%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-9.249e-02	1.0000	15.0	2.18%	1423.9	2.96%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-9.089e-02	1.0000	15.0	2.18%	1426.8	2.97%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.226e-02	1.0000	15.0	2.18%	1443.4	3.00%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-8.203e-02	1.0000	2.0	0.29%	292.4	0.61%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-7.884e-02	1.0000	4.0	0.58%	496.5	1.03%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-7.810e-02	1.0000	9.0	1.31%	947.3	1.97%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.577e-02	1.0000	6.0	0.87%	686.9	1.43%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.754e-02	1.0000	15.0	2.18%	1476.1	3.07%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-6.301e-02	1.0000	1.0	0.15%	195.6	0.41%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-6.203e-02	1.0000	40.0	5.81%	3484.2	7.25%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-6.054e-02	1.0000	107.0	15.55%	8528.1	17.74%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-6.006e-02	1.0000	3.0	0.44%	425.0	0.88%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.765e-02	1.0000	1.0	0.15%	201.1	0.42%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.765e-02	1.0000	1.0	0.15%	201.1	0.42%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-4.690e-02	1.0000	1.0	0.15%	215.6	0.45%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.559e-02	1.0000	16.0	2.33%	1624.0	3.38%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-4.357e-02	1.0000	2.0	0.29%	344.8	0.72%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-4.008e-02	1.0000	98.0	14.24%	7998.3	16.63%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.966e-02	1.0000	9.0	1.31%	1038.9	2.16%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-3.825e-02	1.0000	5.0	0.73%	669.5	1.39%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.767e-02	1.0000	3.0	0.44%	467.7	0.97%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-3.763e-02	1.0000	1.0	0.15%	230.7	0.48%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-3.730e-02	1.0000	8.0	1.16%	955.2	1.99%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-3.402e-02	1.0000	26.0	3.78%	2502.8	5.21%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-3.302e-02	1.0000	3.0	0.44%	479.6	1.00%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.863e-02	1.0000	79.0	11.48%	6672.0	13.88%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.494e-02	1.0000	12.0	1.74%	1369.3	2.85%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.763e-02	1.0000	1.0	0.15%	282.1	0.59%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.513e-02	1.0000	16.0	2.33%	1794.6	3.73%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.345e-02	1.0000	4.0	0.58%	671.2	1.40%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-4.842e-03	1.0000	13.0	1.89%	1677.1	3.49%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-4.115e-03	1.0000	40.0	5.81%	4044.4	8.41%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.321e-03	1.0000	2.0	0.29%	549.8	1.14%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.764e-03	1.0000	9.0	1.31%	1355.4	2.82%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.892e-03	1.0000	80.0	11.63%	7410.5	15.41%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.869e-03	1.0000	61.0	8.87%	5904.9	12.28%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.639e-03	1.0000	42.0	6.10%	4373.2	9.09%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.324e-03	1.0000	2.0	0.29%	620.5	1.29%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-5.890e-04	1.0000	1.0	0.15%	517.8	1.08%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-5.270e-04	1.0000	5.0	0.73%	1084.5	2.26%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-3.630e-04	1.0000	7.0	1.02%	1351.0	2.81%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.000e-06	1.0000	1.0	0.15%	987.1	2.05%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-0.000e+00	1.0000	40.0	5.81%	5372.1	11.17%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	19.1	0.04%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	0.000e+00	1.0000	0.0	0.00%	53.0	0.11%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	0.000e+00	1.0000	0.0	0.00%	44.2	0.09%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	15.9	0.03%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	0.000e+00	1.0000	0.0	0.00%	136.8	0.28%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	44.1	0.09%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	93.2	0.19%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	0.0	0.00%	172.3	0.36%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	0.000e+00	1.0000	0.0	0.00%	88.3	0.18%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	503.1	1.05%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	11.6	0.02%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	7.1	0.01%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	0.0	0.00%	33.8	0.07%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	59.5	0.12%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	114.9	0.24%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	5.0	0.01%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	4.8	0.01%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	21.5	0.04%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	69.9	0.15%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	21.1	0.04%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	4.2	0.01%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	0.000e+00	1.0000	0.0	0.00%	118.4	0.25%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	39.6	0.08%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	10.2	0.02%