Information for 4-CCGCGGGCTGCGAGCC (Motif 11)

A G T C A G T C A C T G A G T C A T C G T A C G A C T G A G T C A G C T A C T G A T G C A C T G C T G A A T C G A T G C A G T C
Reverse Opposite:
A C T G A T C G A T G C A G C T A G T C A T C G T A G C C T G A A C T G A G T C A G T C A T G C A C T G G T A C A C T G A C T G
p-value:1e-9
log p-value:-2.176e+01
Information Content per bp:1.846
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.4 +/- 11.7bp
Average Position of motif in Background48.9 +/- 37.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC3/MA0697.1/Jaspar

Match Rank:1
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCGCGGGCTGCGAGCC
GACCCCCCGCTGCGC---
 A C G T A C G T A G T C A G T C A C T G A G T C A T C G T A C G A C T G A G T C A G C T A C T G A T G C A C T G C T G A A T C G A T G C A G T C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCGCGGGCTGCGAGCC-
---CTGGCAGNCTGCCA
 A G T C A G T C A C T G A G T C A T C G T A C G A C T G A G T C A G C T A C T G A T G C A C T G C T G A A T C G A T G C A G T C A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCGCGGGCTGCGAGCC
GACCCCCCGCTGTG----
 A C G T A C G T A G T C A G T C A C T G A G T C A T C G T A C G A C T G A G T C A G C T A C T G A T G C A C T G C T G A A T C G A T G C A G T C
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T A C G T

Tcfl5/MA0632.1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CCGCGGGCTGCGAGCC
GGCACGTGCC-------
 A C G T A G T C A G T C A C T G A G T C A T C G T A C G A C T G A G T C A G C T A C T G A T G C A C T G C T G A A T C G A T G C A G T C
C T A G A C T G G T A C C T G A A G T C T C A G G A C T C A T G T G A C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CCGCGGGCTGCGAGCC---
---TTGGCANNNTGCCAAG
 A G T C A G T C A C T G A G T C A T C G T A C G A C T G A G T C A G C T A C T G A T G C A C T G C T G A A T C G A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

TFAP2A/MA0003.3/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CCGCGGGCTGCGAGCC
CGCCTCAGGCA-------
 A C G T A C G T A G T C A G T C A C T G A G T C A T C G T A C G A C T G A G T C A G C T A C T G A T G C A C T G C T G A A T C G A T G C A G T C
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCGCGGGCTGCGAGCC
TCNCCTGCTGNGNNN-
 A G T C A G T C A C T G A G T C A T C G T A C G A C T G A G T C A G C T A C T G A T G C A C T G C T G A A T C G A T G C A G T C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CCGCGGGCTGCGAGCC
GGCCYCCTGCTGDGH---
 A C G T A C G T A G T C A G T C A C T G A G T C A T C G T A C G A C T G A G T C A G C T A C T G A T G C A C T G C T G A A T C G A T G C A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CCGCGGGCTGCGAGCC
GACCCCCCGCTGTGC---
 A C G T A C G T A G T C A G T C A C T G A G T C A T C G T A C G A C T G A G T C A G C T A C T G A T G C A C T G C T G A A T C G A T G C A G T C
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CCGCGGGCTGCGAGCC
TGCCTGAGGCN-------
 A C G T A C G T A G T C A G T C A C T G A G T C A T C G T A C G A C T G A G T C A G C T A C T G A T G C A C T G C T G A A T C G A T G C A G T C
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T