Information for 8-CTGCAGGGTRGTG (Motif 10)

A G T C A C G T A C T G G T A C C G T A A C T G A C T G A C T G A C G T C T G A A T C G A G C T A C T G
Reverse Opposite:
A G T C T C G A A T G C A G C T C G T A A G T C A G T C A G T C A C G T A C T G A G T C C G T A A C T G
p-value:1e-8
log p-value:-1.906e+01
Information Content per bp:1.880
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif19.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets54.6 +/- 13.2bp
Average Position of motif in Background53.2 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTGCAGGGTRGTG
CACAGCAGGGGG---
 A C G T A C G T A G T C A C G T A C T G G T A C C G T A A C T G A C T G A C T G A C G T C T G A A T C G A G C T A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTGCAGGGTRGTG
DCHCAGCAGGRGGCC-
 A C G T A C G T A C G T A G T C A C G T A C T G G T A C C G T A A C T G A C T G A C T G A C G T C T G A A T C G A G C T A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGCAGGGTRGTG---
-NNVDGGGYGGGGCYN
 A G T C A C G T A C T G G T A C C G T A A C T G A C T G A C T G A C G T C T G A A T C G A G C T A C T G A C G T A C G T A C G T
A C G T T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CTGCAGGGTRGTG
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G G T A C C G T A A C T G A C T G A C T G A C G T C T G A A T C G A G C T A C T G
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

KLF5/MA0599.1/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CTGCAGGGTRGTG-
----GGGGNGGGGC
 A G T C A C G T A C T G G T A C C G T A A C T G A C T G A C T G A C G T C T G A A T C G A G C T A C T G A C G T
A C G T A C G T A C G T A C G T C T A G C T A G A C T G A C T G G A T C A C T G C A T G C T A G C T A G T G A C

Klf4/MA0039.2/Jaspar

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CTGCAGGGTRGTG-
----TGGGTGGGGC
 A G T C A C G T A C T G G T A C C G T A A C T G A C T G A C T G A C G T C T G A A T C G A G C T A C T G A C G T
A C G T A C G T A C G T A C G T C G A T T C A G C T A G A T C G G A C T C A T G A C T G C T A G A C T G A G T C

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CTGCAGGGTRGTG
TNTCCTGCTGTGNNG--
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G G T A C C G T A A C T G A C T G A C T G A C G T C T G A A T C G A G C T A C T G
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T

Klf1/MA0493.1/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CTGCAGGGTRGTG--
----TGGGTGTGGCN
 A G T C A C G T A C T G G T A C C G T A A C T G A C T G A C T G A C G T C T G A A T C G A G C T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G A C T G A C T G G A C T A C T G C A G T C T A G A C T G A G T C G A T C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CTGCAGGGTRGTG
DCTCAGCAGG------
 A C G T A C G T A C G T A G T C A C G T A C T G G T A C C G T A A C T G A C T G A C T G A C G T C T G A A T C G A G C T A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CTGCAGGGTRGTG
TCNCCTGCTGNGNNN--
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G G T A C C G T A A C T G A C T G A C T G A C G T C T G A A T C G A G C T A C T G
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T