Information for 1-TGAGTVTCTGGCTGCC (Motif 3)

G C A T A T C G T G C A C A T G A G C T T G A C A C G T T A G C A C G T C A T G A C T G A T G C A C G T A T C G A G T C A T G C
Reverse Opposite:
A T C G T C A G A T G C T G C A A T C G G T A C G T A C G T C A A C T G T C G A A C T G C T G A G T A C A C G T A T G C C G T A
p-value:1e-13
log p-value:-3.059e+01
Information Content per bp:1.685
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.5 +/- 18.3bp
Average Position of motif in Background29.9 +/- 13.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TGAGTVTCTGGCTGCC
TGAGTGACAGSC----
 G C A T A T C G T G C A C A T G A G C T T G A C A C G T T A G C A C G T C A T G A C T G A T G C A C G T A T C G A G T C A T G C
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.51
Offset:4
Orientation:forward strand
Alignment:TGAGTVTCTGGCTGCC
----GGTCTGGCAT--
 G C A T A T C G T G C A C A T G A G C T T G A C A C G T T A G C A C G T C A T G A C T G A T G C A C G T A T C G A G T C A T G C
A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:TGAGTVTCTGGCTGCC
---------NGCTN--
 G C A T A T C G T G C A C A T G A G C T T G A C A C G T T A G C A C G T C A T G A C T G A T G C A C G T A T C G A G T C A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.50
Offset:10
Orientation:forward strand
Alignment:TGAGTVTCTGGCTGCC
----------GCTGTG
 G C A T A T C G T G C A C A T G A G C T T G A C A C G T T A G C A C G T C A T G A C T G A T G C A C G T A T C G A G T C A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.49
Offset:3
Orientation:forward strand
Alignment:TGAGTVTCTGGCTGCC-
---CTGGCAGNCTGCCA
 G C A T A T C G T G C A C A T G A G C T T G A C A C G T T A G C A C G T C A T G A C T G A T G C A C G T A T C G A G T C A T G C A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.49
Offset:7
Orientation:forward strand
Alignment:TGAGTVTCTGGCTGCC----
-------CTGTCTGTCACCT
 G C A T A T C G T G C A C A T G A G C T T G A C A C G T T A G C A C G T C A T G A C T G A T G C A C G T A T C G A G T C A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.48
Offset:1
Orientation:forward strand
Alignment:TGAGTVTCTGGCTGCC
-VBSYGTCTGG-----
 G C A T A T C G T G C A C A T G A G C T T G A C A C G T T A G C A C G T C A T G A C T G A T G C A C G T A T C G A G T C A T G C
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.48
Offset:7
Orientation:forward strand
Alignment:TGAGTVTCTGGCTGCC
-------TTGGCA---
 G C A T A T C G T G C A C A T G A G C T T G A C A C G T T A G C A C G T C A T G A C T G A T G C A C G T A T C G A G T C A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.47
Offset:4
Orientation:reverse strand
Alignment:TGAGTVTCTGGCTGCC
----TGTCTGDCACCT
 G C A T A T C G T G C A C A T G A G C T T G A C A C G T T A G C A C G T C A T G A C T G A T G C A C G T A T C G A G T C A T G C
A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.47
Offset:-2
Orientation:reverse strand
Alignment:--TGAGTVTCTGGCTGCC
CTTGAGTGGCT-------
 A C G T A C G T G C A T A T C G T G C A C A T G A G C T T G A C A C G T T A G C A C G T C A T G A C T G A T G C A C G T A T C G A G T C A T G C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T