Information for 5-AGTTAGGACAGAG (Motif 11)

C G T A A C T G C A G T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A C G T A C T G A C G T A G T C A G T C A C G T C T G A G C T A A G T C A C G T
p-value:1e-8
log p-value:-1.909e+01
Information Content per bp:1.928
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.5 +/- 29.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AGTTAGGACAGAG----
---TAGGGCAAAGGTCA
 C G T A A C T G C A G T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGTTAGGACAGAG
AAYTAGGTCA---
 C G T A A C T G C A G T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C T G C G T A A C T G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGTTAGGACAGAG----
--GTAGGGCAAAGGTCA
 C G T A A C T G C A G T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGTTAGGACAGAG
--TRAGGTCA---
 C G T A A C T G C A G T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C T G C G T A A C T G
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGTTAGGACAGAG-
----GGAACAAAGR
 C G T A A C T G C A G T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C T G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AGTTAGGACAGAG
TATAAGTAGGTCAA--
 A C G T A C G T A C G T C G T A A C T G C A G T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C T G C G T A A C T G
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGTTAGGACAGAG----
---TGGGGCAAAGGTCA
 C G T A A C T G C A G T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGTTAGGACAGAG-
----AAAACAAAGG
 C G T A A C T G C A G T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C T G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGTTAGGACAGAG
-CCAGGAACAG--
 C G T A A C T G C A G T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C T G C G T A A C T G
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AGTTAGGACAGAG
----AGGTCA---
 C G T A A C T G C A G T A G C T C G T A A C T G A C T G C G T A A G T C C G T A A C T G C G T A A C T G
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T