Information for 3-TTCYMCATGGNAAGGT (Motif 8)

A C G T A C G T A T G C A G C T G T C A A T G C C T G A C A G T A C T G A C T G A C G T C T G A C G T A C T A G A C T G A C G T
Reverse Opposite:
G T C A G T A C A G T C A C G T A G C T C G T A A G T C A G T C G T C A A G C T A T C G A C G T C T G A A T C G G T C A G T C A
p-value:1e-10
log p-value:-2.313e+01
Information Content per bp:1.746
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.0 +/- 27.3bp
Average Position of motif in Background47.3 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTCYMCATGGNAAGGT
NGTTGCCATGGCAA---
 A C G T A C G T A C G T A T G C A G C T G T C A A T G C C T G A C A G T A C T G A C T G A C G T C T G A C G T A C T A G A C T G A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TTCYMCATGGNAAGGT
GGTTGCCATGGCAA---
 A C G T A C G T A C G T A T G C A G C T G T C A A T G C C T G A C A G T A C T G A C T G A C G T C T G A C G T A C T A G A C T G A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TTCYMCATGGNAAGGT
GTCCCCAGGGGA----
 A C G T A C G T A T G C A G C T G T C A A T G C C T G A C A G T A C T G A C T G A C G T C T G A C G T A C T A G A C T G A C G T
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A A C G T A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:4
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:TTCYMCATGGNAAGGT
-----NATGGAAAAN-
 A C G T A C G T A T G C A G C T G T C A A T G C C T G A C A G T A C T G A C T G A C G T C T G A C G T A C T A G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TTCYMCATGGNAAGGT
GTTGCCATGGCAAC--
 A C G T A C G T A T G C A G C T G T C A A T G C C T G A C A G T A C T G A C T G A C G T C T G A C G T A C T A G A C T G A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TTCYMCATGGNAAGGT
TTGCCCTAGGGCAT---
 A C G T A C G T A C G T A T G C A G C T G T C A A T G C C T G A C A G T A C T G A C T G A C G T C T G A C G T A C T A G A C T G A C G T
C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.54
Offset:6
Orientation:forward strand
Alignment:TTCYMCATGGNAAGGT-
------CAGGTAAGTAT
 A C G T A C G T A T G C A G C T G T C A A T G C C T G A C A G T A C T G A C T G A C G T C T G A C G T A C T A G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:TTCYMCATGGNAAGGT
-----CAAGGHCANV-
 A C G T A C G T A T G C A G C T G T C A A T G C C T G A C A G T A C T G A C T G A C G T C T G A C G T A C T A G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TTCYMCATGGNAAGGT
KGTTGCCATGGCAAC--
 A C G T A C G T A C G T A T G C A G C T G T C A A T G C C T G A C A G T A C T G A C T G A C G T C T G A C G T A C T A G A C T G A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.53
Offset:6
Orientation:forward strand
Alignment:TTCYMCATGGNAAGGT-
------AAGGCAAGTGT
 A C G T A C G T A T G C A G C T G T C A A T G C C T G A C A G T A C T G A C T G A C G T C T G A C G T A C T A G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T