Information for 2-CATTCATTCAAAC (Motif 4)

T A G C G T C A C G A T A C G T G A T C C G T A G A C T A G C T G T A C G T C A G T C A C G T A G T A C
Reverse Opposite:
A C T G G C A T C A G T A C G T A C T G C T G A C G T A A C G T C A T G G T C A G C T A C A G T A C T G
p-value:1e-11
log p-value:-2.668e+01
Information Content per bp:1.681
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif3.01%
Number of Background Sequences with motif171.9
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets47.1 +/- 21.4bp
Average Position of motif in Background48.8 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--CATTCATTCAAAC-
NNCATTCATTCATNNN
 A C G T A C G T T A G C G T C A C G A T A C G T G A T C C G T A G A C T A G C T G T A C G T C A G T C A C G T A G T A C A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CATTCATTCAAAC
GACCACATTCATACAAT-
 A C G T A C G T A C G T A C G T A C G T T A G C G T C A C G A T A C G T G A T C C G T A G A C T A G C T G T A C G T C A G T C A C G T A G T A C
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CATTCATTCAAAC
ACATTCATGACACG
 A C G T T A G C G T C A C G A T A C G T G A T C C G T A G A C T A G C T G T A C G T C A G T C A C G T A G T A C
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CATTCATTCAAAC
----NATTCAAAT
 T A G C G T C A C G A T A C G T G A T C C G T A G A C T A G C T G T A C G T C A G T C A C G T A G T A C
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CATTCATTCAAAC
CCATCAATCAAA-
 T A G C G T C A C G A T A C G T G A T C C G T A G A C T A G C T G T A C G T C A G T C A C G T A G T A C
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CATTCATTCAAAC
---TTATGCAAAT
 T A G C G T C A C G A T A C G T G A T C C G T A G A C T A G C T G T A C G T C A G T C A C G T A G T A C
A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CATTCATTCAAAC---
---ATATGCAAATNNN
 T A G C G T C A C G A T A C G T G A T C C G T A G A C T A G C T G T A C G T C A G T C A C G T A G T A C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

PB0001.1_Arid3a_1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CATTCATTCAAAC--
GGGTTTAATTAAAATTC
 A C G T A C G T T A G C G T C A C G A T A C G T G A T C C G T A G A C T A G C T G T A C G T C A G T C A C G T A G T A C A C G T A C G T
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CATTCATTCAAAC
-----ATTAAA--
 T A G C G T C A C G A T A C G T G A T C C G T A G A C T A G C T G T A C G T C A G T C A C G T A G T A C
A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CATTCATTCAAAC-
TAATTCAATGAAGTG
 A C G T T A G C G T C A C G A T A C G T G A T C C G T A G A C T A G C T G T A C G T C A G T C A C G T A G T A C A C G T
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G