Information for 7-RCCAAGGCTKWMA (Motif 14)

C T A G A T G C A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T C G T A G T A C G T C A
Reverse Opposite:
A C G T A C T G C G A T G T C A C G T A A C T G A G T C A G T C A C G T A C G T A C T G A T C G A G T C
p-value:1e-8
log p-value:-1.969e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.6 +/- 29.4bp
Average Position of motif in Background34.6 +/- 11.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-RCCAAGGCTKWMA
TGCCAA--------
 A C G T C T A G A T G C A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T C G T A G T A C G T C A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---RCCAAGGCTKWMA
CGTGCCAAG-------
 A C G T A C G T A C G T C T A G A T G C A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T C G T A G T A C G T C A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RCCAAGGCTKWMA
NTCAAGGTCA---
 C T A G A T G C A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T C G T A G T A C G T C A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:RCCAAGGCTKWMA
-----NGCTN---
 C T A G A T G C A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T C G T A G T A C G T C A
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-RCCAAGGCTKWMA--
TGCCAAAATAAACANN
 A C G T C T A G A T G C A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T C G T A G T A C G T C A A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---RCCAAGGCTKWMA
GGTGCCAAGT------
 A C G T A C G T A C G T C T A G A T G C A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T C G T A G T A C G T C A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.55
Offset:5
Orientation:forward strand
Alignment:RCCAAGGCTKWMA--
-----VGCTGWCAVB
 C T A G A T G C A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T C G T A G T A C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:RCCAAGGCTKWMA
--CAAGGHCANV-
 C T A G A T G C A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T C G T A G T A C G T C A
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:RCCAAGGCTKWMA
BTCAAGGTCA---
 C T A G A T G C A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T C G T A G T A C G T C A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:RCCAAGGCTKWMA
--CNAGGCCT---
 C T A G A T G C A G T C C G T A C G T A A C T G A C T G A G T C A C G T A C G T C G T A G T A C G T C A
A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T