Information for 7-GGCCRTTAKR (Motif 13)

A T C G A C T G T A G C G A T C C T A G A G C T G C A T C T G A C A T G C T G A
Reverse Opposite:
A G C T G T A C G A C T C G T A C T G A A G T C C T A G A T C G A G T C T A G C
p-value:1e-11
log p-value:-2.645e+01
Information Content per bp:1.686
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif4.38%
Number of Background Sequences with motif505.9
Percentage of Background Sequences with motif1.07%
Average Position of motif in Targets50.9 +/- 26.2bp
Average Position of motif in Background49.4 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGCCRTTAKR
GGCVGTTR--
 A T C G A C T G T A G C G A T C C T A G A G C T G C A T C T G A C A T G C T G A
C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGCCRTTAKR
GGCCATTAAC
 A T C G A C T G T A G C G A T C C T A G A G C T G C A T C T G A C A T G C T G A
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGCCRTTAKR
GTCCGCCATTA--
 A C G T A C G T A C G T A T C G A C T G T A G C G A T C C T A G A G C T G C A T C T G A C A T G C T G A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGCCRTTAKR-----
ACGGCCATAAAATTAAT
 A C G T A C G T A T C G A C T G T A G C G A T C C T A G A G C T G C A T C T G A C A T G C T G A A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGCCRTTAKR
-BCMATTAG-
 A T C G A C T G T A G C G A T C C T A G A G C T G C A T C T G A C A T G C T G A
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGCCRTTAKR
TGGCAGTTGG-
 A C G T A T C G A C T G T A G C G A T C C T A G A G C T G C A T C T G A C A T G C T G A
G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGCCRTTAKR
NGCAATTAAA
 A T C G A C T G T A G C G A T C C T A G A G C T G C A T C T G A C A T G C T G A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GGCCRTTAKR
CTAGGCCT-----
 A C G T A C G T A C G T A T C G A C T G T A G C G A T C C T A G A G C T G C A T C T G A C A T G C T G A
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGCCRTTAKR---
TAAGGTAATAAAATTA
 A C G T A C G T A C G T A T C G A C T G T A G C G A T C C T A G A G C T G C A T C T G A C A T G C T G A A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGCCRTTAKR
BRRCVGTTDN-
 A C G T A T C G A C T G T A G C G A T C C T A G A G C T G C A T C T G A C A T G C T G A
A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G A C G T