Information for 5-CGGTGAGTTSCMC (Motif 8)

A G T C C T A G A C T G A C G T A C T G G T C A A C T G A C G T A C G T A T G C A G T C G T C A A G T C
Reverse Opposite:
A C T G A C G T A C T G A T C G C G T A C G T A A G T C A C G T A G T C C G T A A G T C A G T C A C T G
p-value:1e-12
log p-value:-2.830e+01
Information Content per bp:1.916
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.3 +/- 27.2bp
Average Position of motif in Background66.7 +/- 9.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGGTGAGTTSCMC
CAGGTAAGTAT---
 A C G T A G T C C T A G A C T G A C G T A C T G G T C A A C T G A C G T A C G T A T G C A G T C G T C A A G T C
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGGTGAGTTSCMC
-RGTTAGTGCCCY
 A G T C C T A G A C T G A C G T A C T G G T C A A C T G A C G T A C G T A T G C A G T C G T C A A G T C
A C G T C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T

PH0037.1_Hdx/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CGGTGAGTTSCMC--
TNNNATGATTTCNNCNN
 A C G T A C G T A G T C C T A G A C T G A C G T A C T G G T C A A C T G A C G T A C G T A T G C A G T C G T C A A G T C A C G T A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CGGTGAGTTSCMC
NGGGGATTTCCC-
 A G T C C T A G A C T G A C G T A C T G G T C A A C T G A C G T A C G T A T G C A G T C G T C A A G T C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGGTGAGTTSCMC
CNGTGATTTN---
 A G T C C T A G A C T G A C G T A C T G G T C A A C T G A C G T A C G T A T G C A G T C G T C A A G T C
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CGGTGAGTTSCMC
-GGGGATTCCCCC
 A G T C C T A G A C T G A C G T A C T G G T C A A C T G A C G T A C G T A T G C A G T C G T C A A G T C
A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

MF0003.1_REL_class/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CGGTGAGTTSCMC
-GGGGATTTCC--
 A G T C C T A G A C T G A C G T A C T G G T C A A C T G A C G T A C G T A T G C A G T C G T C A A G T C
A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CGGTGAGTTSCMC
-GGGGATTTCC--
 A G T C C T A G A C T G A C G T A C T G G T C A A C T G A C G T A C G T A T G C A G T C G T C A A G T C
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CGGTGAGTTSCMC
TGCTGTGATTT----
 A C G T A C G T A G T C C T A G A C T G A C G T A C T G G T C A A C T G A C G T A C G T A T G C A G T C G T C A A G T C
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CGGTGAGTTSCMC
-GGGAATTTCC--
 A G T C C T A G A C T G A C G T A C T G G T C A A C T G A C G T A C G T A T G C A G T C G T C A A G T C
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T