Information for 14-TGGACTGGAGAGG (Motif 16)

A C G T A C T G A C T G C G T A A G T C A C G T A T C G A C T G C G T A A C T G C T G A A C T G A C T G
Reverse Opposite:
G T A C A G T C A G C T A G T C A C G T A G T C A T G C C G T A A C T G A C G T A G T C A G T C G T C A
p-value:1e-9
log p-value:-2.289e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.2 +/- 28.7bp
Average Position of motif in Background59.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TGGACTGGAGAGG-
----BTBRAGTGSN
 A C G T A C T G A C T G C G T A A G T C A C G T A T C G A C T G C G T A A C T G C T G A A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TGGACTGGAGAGG--
----CTTGAGTGGCT
 A C G T A C T G A C T G C G T A A G T C A C G T A T C G A C T G C G T A A C T G C T G A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TGGACTGGAGAGG-
----CTYRAGTGSY
 A C G T A C T G A C T G C G T A A G T C A C G T A T C G A C T G C G T A A C T G C T G A A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:TGGACTGGAGAGG--
-----TTGAGTGSTT
 A C G T A C T G A C T G C G T A A G T C A C G T A T C G A C T G C G T A A C T G C T G A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TGGACTGGAGAGG
NNATTGGACTTTNGNN-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A G T C A C G T A T C G A C T G C G T A A C T G C T G A A C T G A C T G
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TGGACTGGAGAGG----
NAGANTGGCGGGGNGNA
 A C G T A C T G A C T G C G T A A G T C A C G T A T C G A C T G C G T A A C T G C T G A A C T G A C T G A C G T A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----TGGACTGGAGAGG
NNTGTGGATTSS-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A G T C A C G T A T C G A C T G C G T A A C T G C T G A A C T G A C T G
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:TGGACTGGAGAGG
TGACCTTGAN---
 A C G T A C T G A C T G C G T A A G T C A C G T A T C G A C T G C G T A A C T G C T G A A C T G A C T G
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:9
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--TGGACTGGAGAGG
TGTGGATTNNN----
 A C G T A C G T A C G T A C T G A C T G C G T A A G T C A C G T A T C G A C T G C G T A A C T G C T G A A C T G A C T G
C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:10
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---TGGACTGGAGAGG-
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A A G T C A C G T A T C G A C T G C G T A A C T G C T G A A C T G A C T G A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T