Information for 3-CTCAMGCCTGMGTGCG (Motif 10)

A T G C A C G T T A G C G T C A G T C A A C T G A G T C G A T C A C G T A C T G G T C A A C T G C G A T C T A G T G A C C T A G
Reverse Opposite:
A G T C A C T G A G T C G C T A A G T C A C G T G T A C G T C A C A T G A C T G A G T C A C G T A C G T A T C G G T C A A T C G
p-value:1e-12
log p-value:-2.830e+01
Information Content per bp:1.736
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.7 +/- 15.7bp
Average Position of motif in Background87.5 +/- 1.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX9/MA0781.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTCAMGCCTGMGTGCG
CGTCACGCATGACTGCA
 A C G T A T G C A C G T T A G C G T C A G T C A A C T G A G T C G A T C A C G T A C T G G T C A A C T G C G A T C T A G T G A C C T A G
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX1/MA0779.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTCAMGCCTGMGTGCG
CGTCACGCATGACTGCA
 A C G T A T G C A C G T T A G C G T C A G T C A A C T G A G T C G A T C A C G T A C T G G T C A A C T G C G A T C T A G T G A C C T A G
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCAMGCCTGMGTGCG
GTCATGCHTGRCTGS-
 A T G C A C G T T A G C G T C A G T C A A C T G A G T C G A T C A C G T A C T G G T C A A C T G C G A T C T A G T G A C C T A G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTCAMGCCTGMGTGCG
NGTCACGCTTGGCTGC-
 A C G T A T G C A C G T T A G C G T C A G T C A A C T G A G T C G A T C A C G T A C T G G T C A A C T G C G A T C T A G T G A C C T A G
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T

Pax6/MA0069.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTCAMGCCTGMGTGCG
TTCACGCATGAGTT--
 A T G C A C G T T A G C G T C A G T C A A C T G A G T C G A T C A C G T A C T G G T C A A C T G C G A T C T A G T G A C C T A G
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTCAMGCCTGMGTGCG----
TTTMCGCTTSABTGAACACN
 A T G C A C G T T A G C G T C A G T C A A C T G A G T C G A T C A C G T A C T G G T C A A C T G C G A T C T A G T G A C C T A G A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

PAX5/MA0014.2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTCAMGCCTGMGTGCG---
GTCACGCTTGGCTGCNCNN
 A T G C A C G T T A G C G T C A G T C A A C T G A G T C G A T C A C G T A C T G G T C A A C T G C G A T C T A G T G A C C T A G A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CTCAMGCCTGMGTGCG-
------CTTGAGTGGCT
 A T G C A C G T T A G C G T C A G T C A A C T G A G T C G A T C A C G T A C T G G T C A A C T G C G A T C T A G T G A C C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CTCAMGCCTGMGTGCG-
-------TTGCGTGCVA
 A T G C A C G T T A G C G T C A G T C A A C T G A G T C G A T C A C G T A C T G G T C A A C T G C G A T C T A G T G A C C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Nr2e3/MA0164.1/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CTCAMGCCTGMGTGCG
---AAGCTTG------
 A T G C A C G T T A G C G T C A G T C A A C T G A G T C G A T C A C G T A C T G G T C A A C T G C G A T C T A G T G A C C T A G
A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T