Information for 2-KCCCCTGGTGGCCAWA (Motif 3)

A C T G A G T C A G T C A G T C A T G C G A C T C A T G A C T G A C G T A C T G A C T G G T A C G T A C C T G A C G T A G T C A
Reverse Opposite:
A C G T G C A T A G C T A C T G A C T G A G T C A G T C C G T A A G T C G A T C C G T A A T C G C T A G A C T G A C T G G T A C
p-value:1e-16
log p-value:-3.739e+01
Information Content per bp:1.808
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.5 +/- 21.0bp
Average Position of motif in Background44.7 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----KCCCCTGGTGGCCAWA
TAGCGCCCCCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A T G C G A C T C A T G A C T G A C G T A C T G A C T G G T A C G T A C C T G A C G T A G T C A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------KCCCCTGGTGGCCAWA
ANAGTGCCACCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A T G C G A C T C A T G A C T G A C G T A C T G A C T G G T A C G T A C C T G A C G T A G T C A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.64
Offset:-8
Orientation:forward strand
Alignment:--------KCCCCTGGTGGCCAWA
CNNBRGCGCCCCCTGSTGGC----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A T G C G A C T C A T G A C T G A C G T A C T G A C T G G T A C G T A C C T G A C G T A G T C A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:KCCCCTGGTGGCCAWA
TCCCCTGGGGAC----
 A C T G A G T C A G T C A G T C A T G C G A C T C A T G A C T G A C G T A C T G A C T G G T A C G T A C C T G A C G T A G T C A
A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C A C G T A C G T A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:KCCCCTGGTGGCCAWA
TGCCCNNAGGGCA---
 A C T G A G T C A G T C A G T C A T G C G A C T C A T G A C T G A C G T A C T G A C T G G T A C G T A C C T G A C G T A G T C A
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-KCCCCTGGTGGCCAWA
CCCCCCCGGGGGNN---
 A C G T A C T G A G T C A G T C A G T C A T G C G A C T C A T G A C T G A C G T A C T G A C T G G T A C G T A C C T G A C G T A G T C A
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:KCCCCTGGTGGCCAWA
TGCCCTGAGGGCA---
 A C T G A G T C A G T C A G T C A T G C G A C T C A T G A C T G A C G T A C T G A C T G G T A C G T A C C T G A C G T A G T C A
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:KCCCCTGGTGGCCAWA
TGCCCTGAGGGCA---
 A C T G A G T C A G T C A G T C A T G C G A C T C A T G A C T G A C G T A C T G A C T G G T A C G T A C C T G A C G T A G T C A
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--KCCCCTGGTGGCCAWA
TGWCCTCARNTGACC---
 A C G T A C G T A C T G A G T C A G T C A G T C A T G C G A C T C A T G A C T G A C G T A C T G A C T G G T A C G T A C C T G A C G T A G T C A
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--KCCCCTGGTGGCCAWA
ACCCCCCCGGGGGGN---
 A C G T A C G T A C T G A G T C A G T C A G T C A T G C G A C T C A T G A C T G A C G T A C T G A C T G G T A C G T A C C T G A C G T A G T C A
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G A C G T A C G T A C G T