Information for 8-TTTTAAAAAC (Motif 20)

C G A T G C A T C A G T C A G T G T C A C T G A C T G A T C G A C T G A G T A C
Reverse Opposite:
C A T G G A C T A G C T G A C T A G C T C A G T G T C A G T C A C G T A C G T A
p-value:1e-6
log p-value:-1.496e+01
Information Content per bp:1.678
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.77%
Number of Background Sequences with motif656.7
Percentage of Background Sequences with motif1.37%
Average Position of motif in Targets50.4 +/- 27.9bp
Average Position of motif in Background49.1 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAAAC
CGGTTTCAAA---
 A C G T A C G T A C G T C G A T G C A T C A G T C A G T G T C A C T G A C T G A T C G A C T G A G T A C
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAAAC--
CCGTATTATAAACAA
 A C G T A C G T A C G T C G A T G C A T C A G T C A G T G T C A C T G A C T G A T C G A C T G A G T A C A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTTTAAAAAC
NATTCAAAT--
 A C G T C G A T G C A T C A G T C A G T G T C A C T G A C T G A T C G A C T G A G T A C
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTTTAAAAAC
ATATTAATTAA
 A C G T C G A T G C A T C A G T C A G T G T C A C T G A C T G A T C G A C T G A G T A C
C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTTTAAAAAC
CCTTTTATAGNC
 A C G T A C G T C G A T G C A T C A G T C A G T G T C A C T G A C T G A T C G A C T G A G T A C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

PB0148.1_Mtf1_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAAAC-
AAATAAGAAAAAAC
 A C G T A C G T A C G T C G A T G C A T C A G T C A G T G T C A C T G A C T G A T C G A C T G A G T A C A C G T
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

Arid3a/MA0151.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TTTTAAAAAC
-ATTAAA---
 C G A T G C A T C A G T C A G T G T C A C T G A C T G A T C G A C T G A G T A C
A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTTTAAAAAC
GTCGTAAAAA-
 A C G T C G A T G C A T C A G T C A G T G T C A C T G A C T G A T C G A C T G A G T A C
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTTTAAAAAC-
-TTTAATTGCN
 C G A T G C A T C A G T C A G T G T C A C T G A C T G A T C G A C T G A G T A C A C G T
A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

Hoxd9/MA0913.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTTTAAAAAC
TTTTTATTGC
 C G A T G C A T C A G T C A G T G T C A C T G A C T G A T C G A C T G A G T A C
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C