Information for 11-CTCAGGCGACTGA (Motif 12)

A G T C C G A T A G T C C G T A A C T G A C T G A T G C T A C G G T C A G T A C A G C T A C T G C T G A
Reverse Opposite:
A G C T A G T C C T G A A C T G A C G T A T G C A T C G T A G C A G T C C G A T A C T G C G T A A C T G
p-value:1e-9
log p-value:-2.135e+01
Information Content per bp:1.810
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif9.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets61.0 +/- 12.2bp
Average Position of motif in Background48.6 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:1
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CTCAGGCGACTGA
ATTGCCTGAGGCAAT---
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T A G T C C G T A A C T G A C T G A T G C T A C G G T C A G T A C A G C T A C T G C T G A
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTCAGGCGACTGA
GCCTCAGGGCAT---
 A C G T A C G T A G T C C G A T A G T C C G T A A C T G A C T G A T G C T A C G G T C A G T A C A G C T A C T G C T G A
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTCAGGCGACTGA
SCCTSAGGSCAW---
 A C G T A C G T A G T C C G A T A G T C C G T A A C T G A C T G A T G C T A C G G T C A G T A C A G C T A C T G C T G A
A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTCAGGCGACTGA
AGCCTCAGGCA-----
 A C G T A C G T A C G T A G T C C G A T A G T C C G T A A C T G A C T G A T G C T A C G G T C A G T A C A G C T A C T G C T G A
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTCAGGCGACTGA
CGCCTCAGGCA-----
 A C G T A C G T A C G T A G T C C G A T A G T C C G T A A C T G A C T G A T G C T A C G G T C A G T A C A G C T A C T G C T G A
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTCAGGCGACTGA
CNGTCACGCCAC---
 A C G T A C G T A G T C C G A T A G T C C G T A A C T G A C T G A T G C T A C G G T C A G T A C A G C T A C T G C T G A
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTCAGGCGACTGA---
--NAGGTCANTGACCT
 A G T C C G A T A G T C C G T A A C T G A C T G A T G C T A C G G T C A G T A C A G C T A C T G C T G A A C G T A C G T A C G T
A C G T A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTCAGGCGACTGA
CACAGN-------
 A G T C C G A T A G T C C G T A A C T G A C T G A T G C T A C G G T C A G T A C A G C T A C T G C T G A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CTCAGGCGACTGA
AGCCTCAGGCA-----
 A C G T A C G T A C G T A G T C C G A T A G T C C G T A A C T G A C T G A T G C T A C G G T C A G T A C A G C T A C T G C T G A
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CTCAGGCGACTGA
-----NNNANTGA
 A G T C C G A T A G T C C G T A A C T G A C T G A T G C T A C G G T C A G T A C A G C T A C T G C T G A
A C G T A C G T A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A