Information for 2-AACTGCACATAAACCA (Motif 5)

T C G A C G T A A G T C C A G T T C A G T G A C C G T A A G T C C T G A C A G T T C G A G T C A T C G A T G A C A T G C G C T A
Reverse Opposite:
C G A T A T C G A C T G A G C T A C G T A C G T G T C A G A C T T C A G G A C T A C T G A G T C G T C A A C T G C G A T A G C T
p-value:1e-15
log p-value:-3.661e+01
Information Content per bp:1.639
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.4 +/- 21.8bp
Average Position of motif in Background12.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0104.1_Zscan4_1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AACTGCACATAAACCA
TACATGTGCACATAAAA--
 A C G T A C G T A C G T T C G A C G T A A G T C C A G T T C A G T G A C C G T A A G T C C T G A C A G T T C G A G T C A T C G A T G A C A T G C G C T A
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AACTGCACATAAACCA
CAGATGTGCACATACGT--
 A C G T A C G T A C G T T C G A C G T A A G T C C A G T T C A G T G A C C G T A A G T C C T G A C A G T T C G A G T C A T C G A T G A C A T G C G C T A
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AACTGCACATAAACCA
CGAAGCACACAAAATA
 T C G A C G T A A G T C C A G T T C A G T G A C C G T A A G T C C T G A C A G T T C G A G T C A T C G A T G A C A T G C G C T A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AACTGCACATAAACCA
ATTTGCATACAATGG-
 T C G A C G T A A G T C C A G T T C A G T G A C C G T A A G T C C T G A C A G T T C G A G T C A T C G A T G A C A T G C G C T A
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AACTGCACATAAACCA
----GGCCATAAATCA
 T C G A C G T A A G T C C A G T T C A G T G A C C G T A A G T C C T G A C A G T T C G A G T C A T C G A T G A C A T G C G C T A
A C G T A C G T A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AACTGCACATAAACCA
----GGCCATAAATCA
 T C G A C G T A A G T C C A G T T C A G T G A C C G T A A G T C C T G A C A G T T C G A G T C A T C G A T G A C A T G C G C T A
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AACTGCACATAAACCA
-----GCCATAAATCA
 T C G A C G T A A G T C C A G T T C A G T G A C C G T A A G T C C T G A C A G T T C G A G T C A T C G A T G A C A T G C G C T A
A C G T A C G T A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:AACTGCACATAAACCA-
----GGCCATAAATCAC
 T C G A C G T A A G T C C A G T T C A G T G A C C G T A A G T C C T G A C A G T T C G A G T C A T C G A T G A C A T G C G C T A A C G T
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:AACTGCACATAAACCA
----NGYCATAAAWCH
 T C G A C G T A A G T C C A G T T C A G T G A C C G T A A G T C C T G A C A G T T C G A G T C A T C G A T G A C A T G C G C T A
A C G T A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AACTGCACATAAACCA---
NNCCTGNAAAAAAAAAAAAA
 A C G T T C G A C G T A A G T C C A G T T C A G T G A C C G T A A G T C C T G A C A G T T C G A G T C A T C G A T G A C A T G C G C T A A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A