Information for 11-TGATGCCAAT (Motif 21)

A C G T A C T G C G T A C A G T A T C G A G T C A G T C C G T A C G T A A G C T
Reverse Opposite:
T C G A A C G T C G A T A C T G C T A G A T G C G T C A A C G T G T A C G T C A
p-value:1e-8
log p-value:-2.000e+01
Information Content per bp:1.847
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif60.2
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets54.3 +/- 25.7bp
Average Position of motif in Background47.5 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TGATGCCAAT-
-GGTGCCAAGT
 A C G T A C T G C G T A C A G T A T C G A G T C A G T C C G T A C G T A A G C T A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TGATGCCAAT
-CGTGCCAAG
 A C G T A C T G C G T A C A G T A T C G A G T C A G T C C G T A C G T A A G C T
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:TGATGCCAAT
---TGCCAA-
 A C G T A C T G C G T A C A G T A T C G A G T C A G T C C G T A C G T A A G C T
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGATGCCAAT
TTATGCAAAT
 A C G T A C T G C G T A C A G T A T C G A G T C A G T C C G T A C G T A A G C T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TGATGCCAAT-
--ATGCCAACC
 A C G T A C T G C G T A C A G T A T C G A G T C A G T C C G T A C G T A A G C T A C G T
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TGATGCCAAT---
-TATGCWAATBAV
 A C G T A C T G C G T A C A G T A T C G A G T C A G T C C G T A C G T A A G C T A C G T A C G T A C G T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TGATGCCAAT---
-WATGCAAATGAG
 A C G T A C T G C G T A C A G T A T C G A G T C A G T C C G T A C G T A A G C T A C G T A C G T A C G T
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

POU3F1/MA0786.1/Jaspar

Match Rank:8
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TGATGCCAAT--
TTATGCAAATTA
 A C G T A C T G C G T A C A G T A T C G A G T C A G T C C G T A C G T A A G C T A C G T A C G T
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:9
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGATGCCAAT--
TTATGCAAATTA
 A C G T A C T G C G T A C A G T A T C G A G T C A G T C C G T A C G T A A G C T A C G T A C G T
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGATGCCAAT----
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C T G C G T A C A G T A T C G A G T C A G T C C G T A C G T A A G C T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A