Information for 13-GGCAAATGGCCAG (Motif 24)

C T A G A C T G G T A C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C T G A G T C A G T C
p-value:1e-8
log p-value:-1.923e+01
Information Content per bp:1.940
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.2 +/- 24.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GGCAAATGGCCAG-
TTGGCANNNTGCCAAG
 A C G T A C G T C T A G A C T G G T A C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGCAAATGGCCAG
-GTTAATGGCC--
 C T A G A C T G G T A C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGCAAATGGCCAG---
GGGRAARRGRMCAGMTG
 A C G T C T A G A C T G G T A C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGCAAATGGCCAG
TGGCAGNCTGCCAG
 A C G T C T A G A C T G G T A C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGCAAATGGCCAG
AACAGATGGC---
 C T A G A C T G G T A C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GGCAAATGGCCAG---
------TGCCCAGNHW
 C T A G A C T G G T A C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GGCAAATGGCCAG-
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T C T A G A C T G G T A C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGCAAATGGCCAG
TGGCACCATGCCAA
 A C G T C T A G A C T G G T A C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGCAAATGGCCAG--
TGACANARRCCAGRC
 C T A G A C T G G T A C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G A C G T A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

NEUROD2/MA0668.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGCAAATGGCCAG
ACCATATGGC---
 C T A G A C T G G T A C C G T A C G T A C G T A A C G T A C T G A C T G A G T C A G T C C G T A A C T G
C T G A T G A C G T A C C T G A A C G T C T G A G A C T A T C G A C T G A G T C A C G T A C G T A C G T