Information for 13-CAAAGAAGGCGGC (Motif 23)

A G T C C G T A C G T A C G T A T C A G C G T A C G T A A C T G A C T G G T A C A C T G C T A G G T A C
Reverse Opposite:
A C T G A G T C A G T C A C T G A G T C A G T C A C G T A C G T A G T C A C G T A C G T A C G T A C T G
p-value:1e-9
log p-value:-2.142e+01
Information Content per bp:1.937
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.6 +/- 27.5bp
Average Position of motif in Background41.1 +/- 35.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CAAAGAAGGCGGC
-CAAGATGGCGGC
 A G T C C G T A C G T A C G T A T C A G C G T A C G T A A C T G A C T G G T A C A C T G C T A G G T A C
A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CAAAGAAGGCGGC
-CAAGATGGCGGC
 A G T C C G T A C G T A C G T A T C A G C G T A C G T A A C T G A C T G G T A C A C T G C T A G G T A C
A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAAAGAAGGCGGC
CACAGCAGGGGG-
 A G T C C G T A C G T A C G T A T C A G C G T A C G T A A C T G A C T G G T A C A C T G C T A G G T A C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

E2F3/MA0469.2/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAAAGAAGGCGGC------
-AAAAATGGCGCCATTTTT
 A G T C C G T A C G T A C G T A T C A G C G T A C G T A A C T G A C T G G T A C A C T G C T A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAAAGAAGGCGGC-
DCHCAGCAGGRGGCC
 A C G T A G T C C G T A C G T A C G T A T C A G C G T A C G T A A C T G A C T G G T A C A C T G C T A G G T A C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

YY2/MA0748.1/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CAAAGAAGGCGGC-
---TAATGGCGGNC
 A G T C C G T A C G T A C G T A T C A G C G T A C G T A A C T G A C T G G T A C A C T G C T A G G T A C A C G T
A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAAAGAAGGCGGC------
--NNNAAGGGGGCGGGNNN
 A G T C C G T A C G T A C G T A T C A G C G T A C G T A A C T G A C T G G T A C A C T G C T A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

E2F2/MA0864.1/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CAAAGAAGGCGGC-----
--AAAATGGCGCCATTTT
 A G T C C G T A C G T A C G T A T C A G C G T A C G T A A C T G A C T G G T A C A C T G C T A G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T

PROX1/MA0794.1/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CAAAGAAGGCGGC---
----TAAGGCGTCTTG
 A G T C C G T A C G T A C G T A T C A G C G T A C G T A A C T G A C T G G T A C A C T G C T A G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T C G A G T C A T C A G C T A G G T A C C T A G A G C T G A T C C G A T G A C T T C A G

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CAAAGAAGGCGGC
TNCCATATATGG----
 A C G T A C G T A C G T A G T C C G T A C G T A C G T A T C A G C G T A C G T A A C T G A C T G G T A C A C T G C T A G G T A C
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T A C G T A C G T A C G T