Information for 18-GGAGCAAAGTCTG (Motif 23)

A C T G A C T G C G T A A C T G A G T C G C T A T C G A C G T A A C T G A C G T A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G C G T A A G T C A C G T A C G T C A G T A C T G A G T C A C G T A G T C A G T C
p-value:1e-8
log p-value:-1.908e+01
Information Content per bp:1.940
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets41.5 +/- 21.6bp
Average Position of motif in Background37.2 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCAAAGTCTG
CGGAGC--------
 A C G T A C T G A C T G C G T A A C T G A G T C G C T A T C G A C G T A A C T G A C G T A G T C A C G T A C T G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGAGCAAAGTCTG--
GGGGTCAAAGTCCAAT
 A C G T A C T G A C T G C G T A A C T G A G T C G C T A T C G A C G T A A C T G A C G T A G T C A C G T A C T G A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GGAGCAAAGTCTG-
------TWGTCTGV
 A C T G A C T G C G T A A C T G A G T C G C T A T C G A C G T A A C T G A C G T A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGAGCAAAGTCTG
AGAGTCCAAAGTCCA
 A C G T A C G T A C T G A C T G C G T A A C T G A G T C G C T A T C G A C G T A A C T G A C G T A G T C A C G T A C T G
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCAAAGTCTG
GGGAGGACNG----
 A C G T A C T G A C T G C G T A A C T G A G T C G C T A T C G A C G T A A C T G A C G T A G T C A C G T A C T G
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GGAGCAAAGTCTG-
------CTGTCTGG
 A C T G A C T G C G T A A C T G A G T C G C T A T C G A C G T A A C T G A C G T A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GGAGCAAAGTCTG-
----VBSYGTCTGG
 A C T G A C T G C G T A A C T G A G T C G C T A T C G A C G T A A C T G A C G T A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGAGCAAAGTCTG
GGAACAAAGR---
 A C T G A C T G C G T A A C T G A G T C G C T A T C G A C G T A A C T G A C G T A G T C A C G T A C T G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GGAGCAAAGTCTG
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C G C T A T C G A C G T A A C T G A C G T A G T C A C G T A C T G
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GGAGCAAAGTCTG
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C G C T A T C G A C G T A A C T G A C G T A G T C A C G T A C T G
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A