Information for 6-AGCCAATTGC (Motif 5)

C G T A A C T G A G T C A G T C G T C A C T G A G A C T A G C T A C T G G T A C
Reverse Opposite:
A C T G A G T C C T G A C T G A G A C T A C G T T A C G A C T G A G T C A C G T
p-value:1e-13
log p-value:-3.108e+01
Information Content per bp:1.847
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif73.6
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets61.2 +/- 21.1bp
Average Position of motif in Background50.0 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGCCAATTGC
AGCCAATCGG
 C G T A A C T G A G T C A G T C G T C A C T G A G A C T A G C T A C T G G T A C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

PH0024.1_Dlx5/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---AGCCAATTGC---
NANNGNTAATTACCNN
 A C G T A C G T A C G T C G T A A C T G A G T C A G T C G T C A C T G A G A C T A G C T A C T G G T A C A C G T A C G T A C G T
A T G C T C G A A C T G T G C A T C A G A T G C G A C T G T C A C G T A G A C T C A G T C T G A A G T C A G T C A T G C T A G C

PH0009.1_Bsx/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---AGCCAATTGC---
NTNAGNTAATTACCTN
 A C G T A C G T A C G T C G T A A C T G A G T C A G T C G T C A C T G A G A C T A G C T A C T G G T A C A C G T A C G T A C G T
G A T C G A C T A T C G T C G A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A G T A C G A T C A C G T A C T G

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AGCCAATTGC
ACTAGCCAATCA-
 A C G T A C G T A C G T C G T A A C T G A G T C A G T C G T C A C T G A G A C T A G C T A C T G G T A C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGCCAATTGC
TGCCAA----
 C G T A A C T G A G T C A G T C G T C A C T G A G A C T A G C T A C T G G T A C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

PH0007.1_Barx1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGCCAATTGC-----
AAAGTAATTAGTGAAT
 A C G T C G T A A C T G A G T C A G T C G T C A C T G A G A C T A G C T A C T G G T A C A C G T A C G T A C G T A C G T A C G T
G T C A G T C A T C G A T A C G G A C T T G C A G T C A A C G T A C G T C T G A A T C G A G C T C A T G G C T A C G T A G C A T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATTGC
CGTGCCAAG---
 A C G T A C G T C G T A A C T G A G T C A G T C G T C A C T G A G A C T A G C T A C T G G T A C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGCCAATTGC
CAGCC------
 A C G T C G T A A C T G A G T C A G T C G T C A C T G A G A C T A G C T A C T G G T A C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATTGC----
TAAGCCACTTGAAATT
 A C G T A C G T C G T A A C T G A G T C A G T C G T C A C T G A G A C T A G C T A C T G G T A C A C G T A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PB0150.1_Mybl1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGCCAATTGC----
CGACCAACTGCCGTG
 A C G T C G T A A C T G A G T C A G T C G T C A C T G A G A C T A G C T A C T G G T A C A C G T A C G T A C G T A C G T
A G T C A T C G T G C A G A T C G A T C G C T A G T C A A G T C A G C T A C T G G A T C G T A C C T A G G C A T A C T G