Information for 5-CCRTRWTRTKYTARGW (Motif 6)

G T A C A G T C C T G A A G C T C T A G C G A T A G C T C T G A A C G T A C G T A G T C A C G T C T G A C T G A A C T G C G A T
Reverse Opposite:
C G T A A G T C A G C T A G C T C G T A C T A G G T C A C G T A A G C T C T G A C G T A A G T C C T G A A G C T A C T G A C T G
p-value:1e-5
log p-value:-1.301e+01
Information Content per bp:1.791
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif6.06%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.0 +/- 30.0bp
Average Position of motif in Background78.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCRTRWTRTKYTARGW
NNNTGTTGTTGTTNG-
 G T A C A G T C C T G A A G C T C T A G C G A T A G C T C T G A A C G T A C G T A G T C A C G T C T G A C T G A A C T G C G A T
C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:2
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCRTRWTRTKYTARGW-
-NNTTTTGTTTTGATNT
 G T A C A G T C C T G A A G C T C T A G C G A T A G C T C T G A A C G T A C G T A G T C A C G T C T G A C T G A A C T G C G A T A C G T
A C G T C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T

MEF2C/MA0497.1/Jaspar

Match Rank:3
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CCRTRWTRTKYTARGW--
---TTCTATTTTTAGNNN
 G T A C A G T C C T G A A G C T C T A G C G A T A G C T C T G A A C G T A C G T A G T C A C G T C T G A C T G A A C T G C G A T A C G T A C G T
A C G T A C G T A C G T C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:CCRTRWTRTKYTARGW
-----CTATTTTTGG-
 G T A C A G T C C T G A A G C T C T A G C G A T A G C T C T G A A C G T A C G T A G T C A C G T C T G A C T G A A C T G C G A T
A C G T A C G T A C G T A C G T A C G T A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G A C G T

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----CCRTRWTRTKYTARGW
GCNGCCATCTTG--------
 A C G T A C G T A C G T A C G T G T A C A G T C C T G A A G C T C T A G C G A T A G C T C T G A A C G T A C G T A G T C A C G T C T G A C T G A A C T G C G A T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:6
Score:0.50
Offset:4
Orientation:forward strand
Alignment:CCRTRWTRTKYTARGW-
----ATTATGCTAATTT
 G T A C A G T C C T G A A G C T C T A G C G A T A G C T C T G A A C G T A C G T A G T C A C G T C T G A C T G A A C T G C G A T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CCRTRWTRTKYTARGW
CCATTGTATGCAAAT-
 G T A C A G T C C T G A A G C T C T A G C G A T A G C T C T G A A C G T A C G T A G T C A C G T C T G A C T G A A C T G C G A T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:CCRTRWTRTKYTARGW
----KCTATTTTTRGH
 G T A C A G T C C T G A A G C T C T A G C G A T A G C T C T G A A C G T A C G T A G T C A C G T C T G A C T G A A C T G C G A T
A C G T A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

ZNF410/MA0752.1/Jaspar

Match Rank:9
Score:0.49
Offset:-6
Orientation:forward strand
Alignment:------CCRTRWTRTKYTARGW
TCCATCCCATAATACTC-----
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C A G T C C T G A A G C T C T A G C G A T A G C T C T G A A C G T A C G T A G T C A C G T C T G A C T G A A C T G C G A T
A C G T T G A C G A T C G C T A C A G T G T A C G T A C A T G C G T C A A G C T G T C A T C G A G A C T C T G A G T A C A G C T G T A C A C G T A C G T A C G T A C G T A C G T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:10
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CCRTRWTRTKYTARGW
GAACADWATGTTCTT---
 A C G T A C G T G T A C A G T C C T G A A G C T C T A G C G A T A G C T C T G A A C G T A C G T A G T C A C G T C T G A C T G A A C T G C G A T
C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T A C G T A C G T A C G T