Information for 2-TKAKAATKMATGKKAA (Motif 3)

A C G T A C G T C G T A A C G T C G T A C G T A A C G T C A G T G T C A C T G A A C G T A C T G A C T G A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T G T A C G T A C A G T C C G T A A G C T A C G T G T A C C G T A A C G T A C G T T G A C A C G T G T C A C G T A
p-value:1e-8
log p-value:-1.946e+01
Information Content per bp:1.841
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets26.0 +/- 10.0bp
Average Position of motif in Background46.1 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TKAKAATKMATGKKAA
NANTATTATAATTNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C A G T G T C A C T G A A C G T A C T G A C T G A C T G C G T A C G T A
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A A C G T A C G T A C G T A C G T A C G T

PB0069.1_Sox21_1/Jaspar

Match Rank:2
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----TKAKAATKMATGKKAA
TTTAATTATAATTAAG-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C A G T G T C A C T G A A C G T A C T G A C T G A C T G C G T A C G T A
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G A C G T A C G T A C G T A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TKAKAATKMATGKKAA
ATGAATAATTAATG----
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C A G T G T C A C T G A A C G T A C T G A C T G A C T G C G T A C G T A
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G A C G T A C G T A C G T A C G T

PB0064.1_Sox14_1/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TKAKAATKMATGKKAA
NNTAATTATAATTNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C A G T G T C A C T G A A C G T A C T G A C T G A C T G C G T A C G T A
C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C A C G T A C G T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TKAKAATKMATGKKAA
ACTATGAATGAATGAT--
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C A G T G T C A C T G A A C G T A C T G A C T G A C T G C G T A C G T A
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TKAKAATKMATGKKAA
ATGCATAATTAATGAG--
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C A G T G T C A C T G A A C G T A C T G A C T G A C T G C G T A C G T A
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G A C G T A C G T

PH0062.1_Hoxb7/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TKAKAATKMATGKKAA
GTAGTAATTAATGCAA-
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C A G T G T C A C T G A A C G T A C T G A C T G A C T G C G T A C G T A
A T C G A G C T T G C A A C T G G A C T G T C A G C T A C G A T C A G T C T G A T G C A A C G T C A T G A T G C G C T A C T G A A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.55
Offset:8
Orientation:forward strand
Alignment:TKAKAATKMATGKKAA----
--------TATGCWAATBAV
 A C G T A C G T C G T A A C G T C G T A C G T A A C G T C A G T G T C A C T G A A C G T A C T G A C T G A C T G C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Hoxd8/MA0910.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TKAKAATKMATGKKAA
TAAATAATTAATGGCTA
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C A G T G T C A C T G A A C G T A C T G A C T G A C T G C G T A C G T A
C A G T G C T A C T G A C G A T G A C T G C T A C G T A C G A T G C A T C G T A G C T A G A C T C T A G C T A G G A T C C G A T G C T A

PH0080.1_Hoxd8/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TKAKAATKMATGKKAA
TAAATAATTAATGGCTA
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A A C G T C A G T G T C A C T G A A C G T A C T G A C T G A C T G C G T A C G T A
C A G T G C T A C T G A C G A T G A C T G C T A C G T A C G A T G C A T C G T A G C T A G A C T C T A G C T A G G A T C C G A T G C T A