Information for 1-GAATATTCTACCT (Motif 2)

T C A G C T G A G T C A C G A T C G T A G A C T C G A T G A T C A G C T G C T A A G T C G T A C C A G T
Reverse Opposite:
G T C A A C T G T C A G C G A T C T G A C T A G C G T A C G T A G A C T C G T A A C G T A G C T A G T C
p-value:1e-8
log p-value:-1.974e+01
Information Content per bp:1.652
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif27.27%
Number of Background Sequences with motif769.1
Percentage of Background Sequences with motif1.67%
Average Position of motif in Targets51.0 +/- 25.5bp
Average Position of motif in Background51.8 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAATATTCTACCT
ATGAATATTC-----
 A C G T A C G T T C A G C T G A G T C A C G A T C G T A G A C T C G A T G A T C A G C T G C T A A G T C G T A C C A G T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T A C G T

HSF1/MA0486.2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAATATTCTACCT
GAACGTTCTAGAA
 T C A G C T G A G T C A C G A T C G T A G A C T C G A T G A T C A G C T G C T A A G T C G T A C C A G T
C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------GAATATTCTACCT
NNTTCTGGAANNTTCTAGAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T G A G T C A C G A T C G T A G A C T C G A T G A T C A G C T G C T A A G T C G T A C C A G T
A T G C T A G C A G C T A G C T T G A C G A C T T C A G T A C G G T C A C T G A A T C G T A G C G A C T C A G T A G T C A G C T T C G A A T C G T G C A T G C A

HSF2/MA0770.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAATATTCTACCT
GAANGTTCTAGAA
 T C A G C T G A G T C A C G A T C G T A G A C T C G A T G A T C A G C T G C T A A G T C G T A C C A G T
T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GAATATTCTACCT
TTCTAGAABNTTCTA---
 A C G T A C G T A C G T A C G T A C G T T C A G C T G A G T C A C G A T C G T A G A C T C G A T G A T C A G C T G C T A A G T C G T A C C A G T
G A C T A G C T G T A C G A C T C T G A A C T G G T C A C T G A A T G C T A C G G A C T A C G T A G T C G A C T C T G A A C G T A C G T A C G T

HSF4/MA0771.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAATATTCTACCT
GAANNTTCTAGAA
 T C A G C T G A G T C A C G A T C G T A G A C T C G A T G A T C A G C T G C T A A G T C G T A C C A G T
T C A G G C T A G C T A A G T C T C A G C G A T C G A T T A G C A G C T T C G A A T C G G T C A G C T A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAATATTCTACCT
ATGMATATDC-----
 A C G T A C G T T C A G C T G A G T C A C G A T C G T A G A C T C G A T G A T C A G C T G C T A A G T C G T A C C A G T
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GAATATTCTACCT
NNTNNCAATATTAG----
 A C G T A C G T A C G T A C G T A C G T T C A G C T G A G T C A C G A T C G T A G A C T C G A T G A T C A G C T G C T A A G T C G T A C C A G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GAATATTCTACCT
NNTNNCAATATTAG----
 A C G T A C G T A C G T A C G T A C G T T C A G C T G A G T C A C G A T C G T A G A C T C G A T G A T C A G C T G C T A A G T C G T A C C A G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T A C G T

TEAD4/MA0809.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAATATTCTACCT
-CACATTCCAT--
 T C A G C T G A G T C A C G A T C G T A G A C T C G A T G A T C A G C T G C T A A G T C G T A C C A G T
A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T A C G T A C G T