Information for 4-AGGCTTTACG (Motif 10)

C G T A A C T G A C T G A G T C A C G T A C G T A C G T C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T C G T A C G T A C G T A A C T G A G T C A G T C A C G T
p-value:1e-2
log p-value:-6.550e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif3.03%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background94.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0065.1_Hoxc10/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGGCTTTACG------
ANNTTTTACGACNTNN
 C G T A A C T G A C T G A G T C A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

PH0077.1_Hoxd12/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTTTACG------
NNNATTTTACGACNNTN
 A C G T C G T A A C T G A C T G A G T C A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

HOXD12/MA0873.1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AGGCTTTACG---
--NTTTTACGACT
 C G T A A C T G A C T G A G T C A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGGCTTTACG---
-DGWTTTATGRCN
 C G T A A C T G A C T G A G T C A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0047.1_Hoxa11/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGCTTTACG------
NNGTTTTACGACTTTA
 C G T A A C T G A C T G A G T C A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

HOXC11/MA0651.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGGCTTTACG---
--NTTTTACGACC
 C G T A A C T G A C T G A G T C A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

HOXC12/MA0906.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGGCTTTACG---
--NTTTTACGACC
 C G T A A C T G A C T G A G T C A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C

PH0067.1_Hoxc12/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTTTACG------
GNNNTTTTACGACCTNA
 A C G T C G T A A C T G A C T G A G T C A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A

PH0066.1_Hoxc11/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGGCTTTACG------
NNNTTTTACGACNTTN
 C G T A A C T G A C T G A G T C A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGCTTTACG--
--NTTTTACGAC
 C G T A A C T G A C T G A G T C A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T
A C G T A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C