Information for 2-CCTCTCTGGGTTGTTC (Motif 2)

A T G C A G T C A C G T T G A C C A G T A T G C A G C T A T C G T A C G C T A G A G C T A C G T C T A G A G C T A G C T A G T C
Reverse Opposite:
A C T G C T G A C T G A A G T C G T C A C T G A A G T C A T G C A T G C C T G A A T C G G C T A A C T G T C G A C T A G A T C G
p-value:1e-14
log p-value:-3.330e+01
Information Content per bp:1.684
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif3.48%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.8 +/- 23.4bp
Average Position of motif in Background68.6 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CCTCTCTGGGTTGTTC
----CGTGGGTGGTCC
 A T G C A G T C A C G T T G A C C A G T A T G C A G C T A T C G T A C G C T A G A G C T A C G T C T A G A G C T A G C T A G T C
A C G T A C G T A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

HSF4/MA0771.1/Jaspar

Match Rank:2
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CCTCTCTGGGTTGTTC
---TTCTAGAACGTTC
 A T G C A G T C A C G T T G A C C A G T A T G C A G C T A T C G T A C G C T A G A G C T A C G T C T A G A G C T A G C T A G T C
A C G T A C G T A C G T C G A T C A G T T A G C A G C T T C G A A T C G G C T A G C T A A G T C T C A G C G A T C G A T A G T C

PB0173.1_Sox21_2/Jaspar

Match Rank:3
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CCTCTCTGGGTTGTTC-----
----AATCAATTGTTCCGCTA
 A T G C A G T C A C G T T G A C C A G T A T G C A G C T A T C G T A C G C T A G A G C T A C G T C T A G A G C T A G C T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CCTCTCTGGGTTGTTC-----
-NNTTCTGGAANNTTCTAGAA
 A T G C A G T C A C G T T G A C C A G T A T G C A G C T A T C G T A C G C T A G A G C T A C G T C T A G A G C T A G C T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A T G C T A G C A G C T A G C T T G A C G A C T T C A G T A C G G T C A C T G A A T C G T A G C G A C T C A G T A G T C A G C T T C G A A T C G T G C A T G C A

HSF1/MA0486.2/Jaspar

Match Rank:5
Score:0.48
Offset:3
Orientation:forward strand
Alignment:CCTCTCTGGGTTGTTC
---TTCTAGAACGTTC
 A T G C A G T C A C G T T G A C C A G T A T G C A G C T A T C G T A C G C T A G A G C T A C G T C T A G A G C T A G C T A G T C
A C G T A C G T A C G T C G A T C A G T T A G C A G C T T G C A A C T G G T C A C G T A A G T C T C A G G C A T C G A T A G T C

PB0065.1_Sox15_1/Jaspar

Match Rank:6
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:CCTCTCTGGGTTGTTC----
---ANNTCTATTGTTCNNNA
 A T G C A G T C A C G T T G A C C A G T A T G C A G C T A T C G T A C G C T A G A G C T A C G T C T A G A G C T A G C T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:7
Score:0.47
Offset:3
Orientation:forward strand
Alignment:CCTCTCTGGGTTGTTC--
---TTCTAGAABNTTCTA
 A T G C A G T C A C G T T G A C C A G T A T G C A G C T A T C G T A C G C T A G A G C T A C G T C T A G A G C T A G C T A G T C A C G T A C G T
A C G T A C G T A C G T G A C T A G C T G T A C G A C T C T G A A C T G G T C A C T G A A T G C T A C G G A C T A C G T A G T C G A C T C T G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.46
Offset:10
Orientation:reverse strand
Alignment:CCTCTCTGGGTTGTTC----
----------CTGTTCCTGG
 A T G C A G T C A C G T T G A C C A G T A T G C A G C T A T C G T A C G C T A G A G C T A C G T C T A G A G C T A G C T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

HSF2/MA0770.1/Jaspar

Match Rank:9
Score:0.46
Offset:3
Orientation:forward strand
Alignment:CCTCTCTGGGTTGTTC
---TTCTAGAACGTTC
 A T G C A G T C A C G T T G A C C A G T A T G C A G C T A T C G T A C G C T A G A G C T A C G T C T A G A G C T A G C T A G T C
A C G T A C G T A C G T C G A T C A G T T G A C A G C T T C G A C T A G G T C A C G T A A G T C C T A G C G A T G A C T A G T C

PB0072.1_Sox5_1/Jaspar

Match Rank:10
Score:0.46
Offset:4
Orientation:reverse strand
Alignment:CCTCTCTGGGTTGTTC----
----NNTTTATTGTTCTNNN
 A T G C A G T C A C G T T G A C C A G T A T G C A G C T A T C G T A C G C T A G A G C T A C G T C T A G A G C T A G C T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A