Information for 13-CTGATGTHTGGAC (Motif 28)

A G T C A C G T T A C G C G T A A C G T A C T G A C G T G C T A A C G T A T C G A T C G C G T A G T A C
Reverse Opposite:
A C T G C G A T A T G C A T G C C G T A C A G T G T C A A G T C C G T A A C G T A T G C C G T A C T A G
p-value:1e-7
log p-value:-1.799e+01
Information Content per bp:1.791
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif13.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets61.6 +/- 11.9bp
Average Position of motif in Background49.5 +/- 23.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------CTGATGTHTGGAC
NNNNNATTGATGNGTGN--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T T A C G C G T A A C G T A C T G A C G T G C T A A C G T A T C G A T C G C G T A G T A C
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTGATGTHTGGAC---
NNTNNTGTCTGGNNTNG
 A C G T A G T C A C G T T A C G C G T A A C G T A C T G A C G T G C T A A C G T A T C G A T C G C G T A G T A C A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTGATGTHTGGAC
ATGATKGATGRC-
 A G T C A C G T T A C G C G T A A C G T A C T G A C G T G C T A A C G T A T C G A T C G C G T A G T A C
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGATGTHTGGAC
-TGATTTATGGC-
 A G T C A C G T T A C G C G T A A C G T A C T G A C G T G C T A A C G T A T C G A T C G C G T A G T A C
A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGATGTHTGGAC
-TGATTTATGGCC
 A G T C A C G T T A C G C G T A A C G T A C T G A C G T G C T A A C G T A T C G A T C G C G T A G T A C
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTGATGTHTGGAC
-TGATTGATGA--
 A G T C A C G T T A C G C G T A A C G T A C T G A C G T G C T A A C G T A T C G A T C G C G T A G T A C
A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CTGATGTHTGGAC
AAGGCCAGATGGTCCGG-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T T A C G C G T A A C G T A C T G A C G T G C T A A C G T A T C G A T C G C G T A G T A C
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTGATGTHTGGAC
---CTGTCTGG--
 A G T C A C G T T A C G C G T A A C G T A C T G A C G T G C T A A C G T A T C G A T C G C G T A G T A C
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGATGTHTGGAC
-TGATTTATGGCC
 A G T C A C G T T A C G C G T A A C G T A C T G A C G T G C T A A C G T A T C G A T C G C G T A G T A C
A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTGATGTHTGGAC
-VBSYGTCTGG--
 A G T C A C G T T A C G C G T A A C G T A C T G A C G T G C T A A C G T A T C G A T C G C G T A G T A C
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T